PDB entry 1tu3

View 1tu3 on RCSB PDB site
Description: Crystal Structure of Rab5 complex with Rabaptin5 C-terminal Domain
Class: protein transport
Keywords: Rab5, Rabaptin5, effector-binding, PROTEIN TRANSPORT
Deposited on 2004-06-24, released 2004-10-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.31 Å
R-factor: 0.222
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ras-related protein Rab-5A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3a_
  • Chain 'B':
    Compound: Ras-related protein Rab-5A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3b_
  • Chain 'C':
    Compound: Ras-related protein Rab-5A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3c_
  • Chain 'D':
    Compound: Ras-related protein Rab-5A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3d_
  • Chain 'E':
    Compound: Ras-related protein Rab-5A
    Species: Homo sapiens [TaxId:9606]
    Gene: RAB5A, RAB5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3e_
  • Chain 'F':
    Compound: Rab GTPase binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3f_
  • Chain 'G':
    Compound: Rab GTPase binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3g_
  • Chain 'H':
    Compound: Rab GTPase binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3h_
  • Chain 'I':
    Compound: Rab GTPase binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3i_
  • Chain 'J':
    Compound: Rab GTPase binding effector protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RABEP1, RABPT5, RABPT5A
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tu3j_
  • Heterogens: MG, GNP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1tu3A (A:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3A (A:)
icqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfeiwdta
gqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnkadl
ankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1tu3B (B:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3B (B:)
kicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfeiwdt
agqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnkad
lankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklp

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1tu3C (C:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3C (C:)
cqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfeiwdtag
qeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnkadla
nkravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1tu3D (D:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3D (D:)
klvllgesavgksslvlrfvkgqfqestigaafltqtvcdttveiwdtagqeryhslapm
yyrgaqaaivvyditneesfaraknwvkelivialsgnkadlankravdfqeaqsyaddn
sllfmetsaktsmnvneifmaiakklp

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1tu3E (E:)
mgnkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfei
wdtagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgn
kadlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklpkn

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3E (E:)
nkicqfklvllgesavgksslvlrfvkgqfhefqestigaafltqtvclddttvkfeiwd
tagqeryhslapmyyrgaqaaivvyditneesfaraknwvkelqrqaspnivialsgnka
dlankravdfqeaqsyaddnsllfmetsaktsmnvneifmaiakklp

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1tu3F (F:)
gplgsakatveqlmfeeknkaqrlqteldvseqvqrdfvklsqtlqvqlerirqadsler
irailndtkltdinqlpet

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3F (F:)
aqrlqteldvseqvqrdfvklsqtlqvqlerirqadslerirailn

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1tu3G (G:)
gplgsakatveqlmfeeknkaqrlqteldvseqvqrdfvklsqtlqvqlerirqadsler
irailndtkltdinqlpet

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3G (G:)
nkaqrlqteldvseqvqrdfvklsqtlqvqlerirqadslerirailndtk

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1tu3H (H:)
gplgsakatveqlmfeeknkaqrlqteldvseqvqrdfvklsqtlqvqlerirqadsler
irailndtkltdinqlpet

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3H (H:)
rlqteldvseqvqrdfvklsqtlqvqlerirqadslerirailn

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1tu3I (I:)
gplgsakatveqlmfeeknkaqrlqteldvseqvqrdfvklsqtlqvqlerirqadsler
irailndtkltdinqlpet

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3I (I:)
aqrlqteldvseqvqrdfvklsqtlqvqlerirqalerirailnd

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1tu3J (J:)
gplgsakatveqlmfeeknkaqrlqteldvseqvqrdfvklsqtlqvqlerirqadsler
irailndtkltdinqlpet

    Sequence, based on observed residues (ATOM records): (download) 
    >1tu3J (J:)
nkaqrlqteldvseqvqrdfvklsqtlqvqlerirqadslerirailndtklt