PDB entry 1tk5

View 1tk5 on RCSB PDB site
Description: T7 DNA polymerase binary complex with 8 oxo guanosine in the templating strand
Class: transferase/electron transport/DNA
Keywords: 8-oxoguanosine DNA polymerase, TRANSFERASE-ELECTRON TRANSPORT-DNA COMPLEX
Deposited on 2004-06-08, released 2004-08-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-01-31, with a file datestamp of 2018-01-26.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase
    Species: Enterobacteria phage T7 [TaxId:10760]
    Gene: 5
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tk5a1, d1tk5a2
  • Chain 'B':
    Compound: Thioredoxin 1
    Species: Escherichia coli [TaxId:562]
    Gene: TRXA, TSNC, FIPA, B3781, C4701, Z5291, ECS4714, STM3915, STMD1.75, STY3639, T3381, SF3854, S3905
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tk5b_
  • Chain 'P':
    Compound: 5'-d(*cp*gp*ap*ap*a*gp*cp*cp*ap*gp*tp*gp*cp*cp*ap*(ddg)p*tp*gp*cp*ap*a)-3'
  • Chain 'T':
    Compound: 5'-d(*cp*cp*cp*(8og)p*cp*tp*gp*gp*cp*ap*cp*tp*gp*gp*cp*cp*gp*tp*cp*gp*tp*tp*tp*tp*cp*g)-3'
  • Heterogens: MG, SO4, MES, 1PE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1tk5A (A:)
mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhn
ghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgale
awgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekll
sdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvel
aarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpknkaq
regrepceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvdd
evlegvrvddpekqaaidlikeylmiqkrigqsaegdkawlryvaedgkihgsvnpngav
tgrathafpnlaqipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclah
fmarfdngeyaheilngdihtknqiaaelptrdnaktfiygflygagdekigqivgagke
rgkelkkkflentpaiaalresiqqtlvessqwvageqqvkwkrrwikgldgrkvhvrsp
haalntllqsagalicklwiikteemlvekglkhgwdgdfaymawvhdeiqvgcrteeia
qvvietaqeamrwvgdhwnfrclldtegkmgpnwaich

    Sequence, based on observed residues (ATOM records): (download) 
    >1tk5A (A:)
mivsdieanallesvtkfhcgviydystaeyvsyrpsdfgayldaleaevargglivfhn
ghkydvpaltklaklqlnrefhlprencidtlvlsrlihsnlkdtdmgllrsgklpgale
awgyrlgemkgeykddfkrmleeqgeeyvdgmewwnfneemmdynvqdvvvtkallekll
sdkhyfppeidftdvgyttfwsesleavdiehraawllakqerngfpfdtkaieelyvel
aarrsellrkltetfgswyqpkggtemfchprtgkplpkypriktpkvggifkkpkaqre
grceldtreyvagapytpvehvvfnpssrdhiqkklqeagwvptkytdkgapvvddevle
gvrvddpekqaaidlikeylmiqkrigqsaegdkawlryvaedgkihgsvnpngavtgra
thafpnlaqipgvrspygeqcraafgaehhldgitgkpwvqagidasglelrclahfmar
fdngeyaheilngdihtknqiaaelptrdnaktfiygflygaigqivgagkergkelkkk
flentpaiaalresiqqtlvesvkwkrrwikgldgrkvhvrsphaalntllqsagalick
lwiikteemlvekglkhgwdgdfaymawvhdeiqvgcrteeiaqvvietaqeamrwvgdh
wnfrclldtegkmgpnwaich

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1tk5B (B:)
sdkiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklni
dqnpgtapkygirgiptlllfkngevaatkvgalskgqlkefldanla

    Sequence, based on observed residues (ATOM records): (download) 
    >1tk5B (B:)
kiihltddsfdtdvlkadgailvdfwaewcgpckmiapildeiadeyqgkltvaklnidq
npgtapkygirgiptlllfkngevaatkvgalskgqlkefldanl

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.