PDB entry 1tjl

View 1tjl on RCSB PDB site
Description: Crystal structure of transcription factor DksA from E. coli
Class: transcription
Keywords: DksA, transcription factor, RNA polymerase, stringent response, ppGpp, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Structural Genomics, TRANSCRIPTION
Deposited on 2004-06-06, released 2004-09-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2014-04-16, with a file datestamp of 2014-04-11.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.228
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjla1, d1tjla2
  • Chain 'B':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjlb1, d1tjlb2
  • Chain 'C':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjlc1, d1tjlc2
  • Chain 'D':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjld1, d1tjld2
  • Chain 'E':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjle1, d1tjle2
  • Chain 'F':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjlf1, d1tjlf2
  • Chain 'G':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjlg1, d1tjlg2
  • Chain 'H':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjlh1, d1tjlh2
  • Chain 'I':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjli1, d1tjli2
  • Chain 'J':
    Compound: DnaK suppressor protein
    Species: Escherichia coli [TaxId:562]
    Gene: DksA
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjlj1, d1tjlj2
  • Heterogens: ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1tjlA (A:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlA (A:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1tjlB (B:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlB (B:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1tjlC (C:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlC (C:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1tjlD (D:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlD (D:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'E':
    Sequence, based on SEQRES records: (download)
    >1tjlE (E:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlE (E:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'F':
    Sequence, based on SEQRES records: (download)
    >1tjlF (F:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlF (F:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'G':
    Sequence, based on SEQRES records: (download)
    >1tjlG (G:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlG (G:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'H':
    Sequence, based on SEQRES records: (download)
    >1tjlH (H:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlH (H:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'I':
    Sequence, based on SEQRES records: (download)
    >1tjlI (I:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlI (I:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag
    

  • Chain 'J':
    Sequence, based on SEQRES records: (download)
    >1tjlJ (J:)
    mqegqnrktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvt
    hmqdeaanfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgve
    igirrlearptadlcidcktlaeirekqmag
    

    Sequence, based on observed residues (ATOM records): (download)
    >1tjlJ (J:)
    rktsslsilaiagvepyqekpgeeymneaqlahfrrileawrnqlrdevdrtvthmqdea
    anfpdpvdraaqeeefslelrnrdrerklikkiektlkkvededfgycescgveigirrl
    earptadlcidcktlaeirekqmag