PDB entry 1tja

View 1tja on RCSB PDB site
Description: Fitting of gp8, gp9, and gp11 into the cryo-EM reconstruction of the bacteriophage T4 contracted tail
Class: Viral protein
Keywords: fitting, docking, cryo-EM, gp8, gp9, gp11, circular symmetry, Viral protein
Deposited on 2004-06-03, released 2004-08-31
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-06.
Experiment type: EM
Resolution: 16 Å
R-factor: N/A
AEROSPACI score: -0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: baseplate structural protein gp8
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjaa_
  • Chain 'B':
    Compound: baseplate structural protein gp8
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjab_
  • Chain 'C':
    Compound: Baseplate structural protein Gp9
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjac_
  • Chain 'D':
    Compound: Baseplate structural protein Gp9
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjad_
  • Chain 'E':
    Compound: Baseplate structural protein Gp9
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjae_
  • Chain 'F':
    Compound: baseplate structural protein gp11
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjaf_
  • Chain 'G':
    Compound: baseplate structural protein gp11
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjag_
  • Chain 'H':
    Compound: baseplate structural protein gp11
    Species: Enterobacteria phage T4 [TaxId:10665]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1tjah_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1tjaA (A:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1tjaA (A:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1tjaB (B:)
mndssviyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappy
ptdsvlgvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapyn
atesgagwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegti
epgdgyvweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliy
rvkantirfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpe
dlmrhsgemiymenrppiimamdqteeinilftf

    Sequence, based on observed residues (ATOM records): (download) 
    >1tjaB (B:)
iyraivtskfrtekmlnfynsigsgpdkntifitfgrsepwssnenevgfappyptdsvl
gvtdmwthmmgtvkvlpsmldaviprrdwgdtrypdpytfrindivvcnsapynatesga
gwlvyrcldvpdtgmcsiasltdkdeclklggkwtpsarsmtppegrgdaegtiepgdgy
vweylfeippdvsinrctneyivvpwpeelkedptrwgyednltwqqddfgliyrvkant
irfkayldsvyfpeaalpgnkgfrqisiitnpleakahpndpnvkaekdyydpedlmrhs
gemiymenrppiimamdqteeinilftf

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1tjaC (C:)
mfiqepkklidtgeignastgdilfdggnkinsdfnaiynafgdqrkmavangtgadgqi
ihatgyyqkhsiteyatpvkvgtrhdidtstvgvkviiergelgdcvefinsngsisvtn
pltiqaidsikgvsgnlvvtspyskvtlrcissdnstsvwnysiesmfgqkespaegtwn
istsgsvdiplfhrteynmakllvtcqsvdgrkiktaeinilvdtvnsevisseyavmrv
gneteedeianiafsikenyvtatissstvgmraavkviatqkigvaq

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1tjaD (D:)
mfiqepkklidtgeignastgdilfdggnkinsdfnaiynafgdqrkmavangtgadgqi
ihatgyyqkhsiteyatpvkvgtrhdidtstvgvkviiergelgdcvefinsngsisvtn
pltiqaidsikgvsgnlvvtspyskvtlrcissdnstsvwnysiesmfgqkespaegtwn
istsgsvdiplfhrteynmakllvtcqsvdgrkiktaeinilvdtvnsevisseyavmrv
gneteedeianiafsikenyvtatissstvgmraavkviatqkigvaq

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1tjaE (E:)
mfiqepkklidtgeignastgdilfdggnkinsdfnaiynafgdqrkmavangtgadgqi
ihatgyyqkhsiteyatpvkvgtrhdidtstvgvkviiergelgdcvefinsngsisvtn
pltiqaidsikgvsgnlvvtspyskvtlrcissdnstsvwnysiesmfgqkespaegtwn
istsgsvdiplfhrteynmakllvtcqsvdgrkiktaeinilvdtvnsevisseyavmrv
gneteedeianiafsikenyvtatissstvgmraavkviatqkigvaq

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1tjaF (F:)
msllnnkagvisrladflgfrpktgdidvmnrqsvgsvtisqlakgfyepniesaindvh
nfsikdvgtiitnktgvspegvsqtdywafsgtvtddslppgspitvlvfglpvsattgm
taiefvakvrvalqeaiasftainsykdhptdgsklevtyldnqkhvlstystygitisq
eiiseskpgygtwnllgaqtvtldnqqtptvfyhferta

    Sequence, based on observed residues (ATOM records): (download) 
    >1tjaF (F:)
srladflgfrpktgdidvmnrqsvgsvtisqlakgfyepniesaindvhnfsikdvgtii
tnktgvspegvsqtdywafsgtvtddslppgspitvlvfglpvsattgmtaiefvakvrv
alqeaiasftainsykdhptdgsklevtyldnqkhvlstystygitisqeiiseskpgyg
twnllgaqtvtldnqqtptvfyhferta

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >1tjaG (G:)
msllnnkagvisrladflgfrpktgdidvmnrqsvgsvtisqlakgfyepniesaindvh
nfsikdvgtiitnktgvspegvsqtdywafsgtvtddslppgspitvlvfglpvsattgm
taiefvakvrvalqeaiasftainsykdhptdgsklevtyldnqkhvlstystygitisq
eiiseskpgygtwnllgaqtvtldnqqtptvfyhferta

    Sequence, based on observed residues (ATOM records): (download) 
    >1tjaG (G:)
srladflgfrpktgdidvmnrqsvgsvtisqlakgfyepniesaindvhnfsikdvgtii
tnktgvspegvsqtdywafsgtvtddslppgspitvlvfglpvsattgmtaiefvakvrv
alqeaiasftainsykdhptdgsklevtyldnqkhvlstystygitisqeiiseskpgyg
twnllgaqtvtldnqqtptvfyhferta

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1tjaH (H:)
msllnnkagvisrladflgfrpktgdidvmnrqsvgsvtisqlakgfyepniesaindvh
nfsikdvgtiitnktgvspegvsqtdywafsgtvtddslppgspitvlvfglpvsattgm
taiefvakvrvalqeaiasftainsykdhptdgsklevtyldnqkhvlstystygitisq
eiiseskpgygtwnllgaqtvtldnqqtptvfyhferta

    Sequence, based on observed residues (ATOM records): (download) 
    >1tjaH (H:)
srladflgfrpktgdidvmnrqsvgsvtisqlakgfyepniesaindvhnfsikdvgtii
tnktgvspegvsqtdywafsgtvtddslppgspitvlvfglpvsattgmtaiefvakvrv
alqeaiasftainsykdhptdgsklevtyldnqkhvlstystygitisqeiiseskpgyg
twnllgaqtvtldnqqtptvfyhferta