PDB entry 1thd

View 1thd on RCSB PDB site
Description: complex organization of dengue virus e protein as revealed by 9.5 angstrom cryo-em reconstruction
Class: virus
Keywords: FLAVIVIRUS, FLAVIVIRIDAE, DENGUE VIRUS, GLYCOPROTEIN E, CRYO-EM, Icosahedral virus, Virus
Deposited on 2004-06-01, released 2004-09-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2018-07-18, with a file datestamp of 2018-07-13.
Experiment type: EM
Resolution: N/A
R-factor: N/A
AEROSPACI score: -0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: major envelope protein E
    Species: Dengue virus 2 Puerto Rico/PR159-S1/1969 [TaxId:11066]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12823 (0-394)
      • conflict (334)
      • conflict (351)
    Domains in SCOPe 2.08: d1thda1, d1thda2
  • Chain 'B':
    Compound: major envelope protein E
    Species: Dengue virus 2 Puerto Rico/PR159-S1/1969 [TaxId:11066]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12823 (0-394)
      • conflict (334)
      • conflict (351)
    Domains in SCOPe 2.08: d1thdb1, d1thdb2
  • Chain 'C':
    Compound: major envelope protein E
    Species: Dengue virus 2 Puerto Rico/PR159-S1/1969 [TaxId:11066]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12823 (0-394)
      • conflict (334)
      • conflict (351)
    Domains in SCOPe 2.08: d1thdc1, d1thdc2

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1thdA (A:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakqpatlrkyc
ieakltntttdsrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygt
vtmecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlkldwfkkg

    Sequence, based on observed residues (ATOM records): (download) 
    >1thdA (A:)
mrcigisnrdfvegvsswvdivlehgscvttmaknkptldfelikteakqpatlrkycie
akltntttdsrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamftck
knmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygtvt
mecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgagsnwiqketlvtfknpha
kkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsysmctgk
fkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivtekdspv
nieaeppfgdsyiiigvepgqlkldwfkkg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1thdB (B:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakqpatlrkyc
ieakltntttdsrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygt
vtmecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlkldwfkkg

    Sequence, based on observed residues (ATOM records): (download) 
    >1thdB (B:)
mrcigisnrdfvegvsswvdivlehgscvttmaknkptldfelikteakqpatlrkycie
akltntttdsrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamftck
knmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygtvt
mecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgagsnwiqketlvtfknpha
kkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsysmctgk
fkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivtekdspv
nieaeppfgdsyiiigvepgqlkldwfkkg

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1thdC (C:)
mrcigisnrdfvegvsggswvdivlehgscvttmaknkptldfelikteakqpatlrkyc
ieakltntttdsrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamft
ckknmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygt
vtmecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgadtqgsnwiqketlvtf
knphakkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsys
mctgkfkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivte
kdspvnieaeppfgdsyiiigvepgqlkldwfkkg

    Sequence, based on observed residues (ATOM records): (download) 
    >1thdC (C:)
mrcigisnrdfvegvsswvdivlehgscvttmaknkptldfelikteakqpatlrkycie
akltntttdsrcptqgeptlneeqdkrfvckhsmvdrgwgngcglfgkggivtcamftck
knmegkivqpenleytvvitphsgeehavgndtgkhgkevkitpqssiteaeltgygtvt
mecsprtgldfnemvllqmkdkawlvhrqwfldlplpwlpgagsnwiqketlvtfknpha
kkqdvvvlgsqegamhtaltgateiqmssgnllftghlkcrlrmdklqlkgmsysmctgk
fkvvkeiaetqhgtivirvqyegdgspckipfeimdlekrhvlgrlitvnpivtekdspv
nieaeppfgdsyiiigvepgqlkldwfkkg