PDB entry 1tf6

View 1tf6 on RCSB PDB site
Description: co-crystal structure of xenopus tfiiia zinc finger domain bound to the 5s ribosomal RNA gene internal control region
Class: transcription/DNA
Keywords: complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein, transcription/DNA complex
Deposited on 1998-03-02, released 1998-07-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.308
AEROSPACI score: 0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (transcription factor iiia)
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tf6a1, d1tf6a2, d1tf6a3, d1tf6a4, d1tf6a5, d1tf6a6
  • Chain 'B':
    Compound: DNA (5'-d(*ap*cp*gp*gp*gp*cp*cp*tp*gp*gp*tp*tp*ap*gp*tp*ap*c p*cp*tp*gp*gp*ap* tp*gp*gp*gp*ap*gp*ap*cp*c)-3')
  • Chain 'C':
    Compound: DNA (5'-d(*tp*gp*gp*tp*cp*tp*cp*cp*cp*ap*tp*cp*cp*ap*gp*gp*t p*ap*cp*tp*ap*ap* cp*cp*ap*gp*gp*cp*cp*cp*g)-3')
  • Chain 'D':
    Compound: protein (transcription factor iiia)
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1tf6d1, d1tf6d2, d1tf6d3, d1tf6d4, d1tf6d5, d1tf6d6
  • Chain 'E':
    Compound: DNA (5'-d(*ap*cp*gp*gp*gp*cp*cp*tp*gp*gp*tp*tp*ap*gp*tp*ap*c p*cp*tp*gp*gp*ap* tp*gp*gp*gp*ap*gp*ap*cp*c)-3')
  • Chain 'F':
    Compound: DNA (5'-d(*tp*gp*gp*tp*cp*tp*cp*cp*cp*ap*tp*cp*cp*ap*gp*gp*t p*ap*cp*tp*ap*ap* cp*cp*ap*gp*gp*cp*cp*cp*g)-3')
  • Heterogens: ZN

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1tf6A (A:)
mgekalpvvykryicsfadcgaaynknwklqahlckhtgekpfpckeegcekgftslhhl
trhslthtgeknftcdsdgcdlrfttkanmkkhfnrfhnikicvyvchfencgkafkkhn
qlkvhqfshtqqlpyecphegcdkrfslpsrlkrhekvhagypckkddscsfvgktwtly
lkhvaechqd

    Sequence, based on observed residues (ATOM records): (download) 
    >1tf6A (A:)
ykryicsfadcgaaynknwklqahlckhtgekpfpckeegcekgftslhhltrhslthtg
eknftcdsdgcdlrfttkanmkkhfnrfhnikicvyvchfencgkafkkhnqlkvhqfsh
tqqlpyecphegcdkrfslpsrlkrhekvhagypckkddscsfvgktwtlylkhvaech

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1tf6D (D:)
mgekalpvvykryicsfadcgaaynknwklqahlckhtgekpfpckeegcekgftslhhl
trhslthtgeknftcdsdgcdlrfttkanmkkhfnrfhnikicvyvchfencgkafkkhn
qlkvhqfshtqqlpyecphegcdkrfslpsrlkrhekvhagypckkddscsfvgktwtly
lkhvaechqd

    Sequence, based on observed residues (ATOM records): (download) 
    >1tf6D (D:)
pvvykryicsfadcgaaynknwklqahlckhtgekpfpckeegcekgftslhhltrhslt
htgeknftcdsdgcdlrfttkanmkkhfnrfhnikicvyvchfencgkafkkhnqlkvhq
fshtqqlpyecphegcdkrfslpsrlkrhekvhagypckkddscsfvgktwtlylkhvae
ch

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.