PDB entry 1td5

View 1td5 on RCSB PDB site
Description: Crystal Structure of the Ligand Binding Domain of E. coli IclR.
Class: transcription
Keywords: MIDWEST CENTER FOR STRUCTURAL GENOMICS, ALPHA/BETA DOMAIN,LIGAND BINDING DOMAIN, TRANSCRIPTION REGULATOR, PSI, Protein Structure Initiative, MCSG
Deposited on 2004-05-21, released 2004-07-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: 0.23
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acetate operon repressor
    Species: Escherichia coli [TaxId:562]
    Gene: ICLR, B4018
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16528 (23-End)
      • cloning artifact (20-22)
      • modified residue (38)
      • modified residue (47)
      • modified residue (69)
      • modified residue (71)
      • modified residue (81)
      • modified residue (183)
      • modified residue (198)
    Domains in SCOPe 2.06: d1td5a1, d1td5a2
  • Chain 'B':
    Compound: Acetate operon repressor
    Species: Escherichia coli [TaxId:562]
    Gene: ICLR, B4018
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16528 (23-End)
      • cloning artifact (20-22)
      • modified residue (38)
      • modified residue (47)
      • modified residue (69)
      • modified residue (71)
      • modified residue (81)
      • modified residue (183)
      • modified residue (198)
    Domains in SCOPe 2.06: d1td5b1, d1td5b2
  • Chain 'C':
    Compound: Acetate operon repressor
    Species: Escherichia coli [TaxId:562]
    Gene: ICLR, B4018
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16528 (23-End)
      • cloning artifact (21-22)
      • modified residue (38)
      • modified residue (47)
      • modified residue (69)
      • modified residue (71)
      • modified residue (81)
      • modified residue (183)
      • modified residue (198)
    Domains in SCOPe 2.06: d1td5c1, d1td5c2
  • Chain 'D':
    Compound: Acetate operon repressor
    Species: Escherichia coli [TaxId:562]
    Gene: ICLR, B4018
    Database cross-references and differences (RAF-indexed):
    • Uniprot P16528 (23-199)
      • cloning artifact (20-22)
      • modified residue (38)
      • modified residue (47)
      • modified residue (69)
      • modified residue (71)
      • modified residue (81)
      • modified residue (183)
      • modified residue (198)
    Domains in SCOPe 2.06: d1td5d1, d1td5d2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1td5A (A:)
mgsshhhhhhssgrenlyfqghmsrnllaivhpilrnlmeesgetvnmavldqsdheaii
idqvqcthlmrmsapiggklpmhasgagkaflaqlseeqvtkllhrkglhaythatlvsp
vhlkedlaqtrkrgysfddeehalglrclaacifdehrepfaaisisgpisritddrvte
fgamvikaakevtlayggmrgs

    Sequence, based on observed residues (ATOM records): (download) 
    >1td5A (A:)
ghmsrnllaivhpilrnlmeesgetvnmavldqsdheaiiidqvqcthlmrmsapiggkl
pmhasgagkaflaqlseeqvtkllhrkglhaythatlvspvhlkedlaqtrkrgysfdde
ehalglrclaacifdehrepfaaisisgpisritddrvtefgamvikaakevtlayggm

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1td5B (B:)
mgsshhhhhhssgrenlyfqghmsrnllaivhpilrnlmeesgetvnmavldqsdheaii
idqvqcthlmrmsapiggklpmhasgagkaflaqlseeqvtkllhrkglhaythatlvsp
vhlkedlaqtrkrgysfddeehalglrclaacifdehrepfaaisisgpisritddrvte
fgamvikaakevtlayggmrgs

    Sequence, based on observed residues (ATOM records): (download) 
    >1td5B (B:)
ghmsrnllaivhpilrnlmeesgetvnmavldqsdheaiiidqvqcthlmrmsapiggkl
pmhasgagkaflaqlseeqvtkllhrkglhaythatlvspvhlkedlaqtrkrgysfdde
ehalglrclaacifdehrepfaaisisgpisritddrvtefgamvikaakevtlayggm

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1td5C (C:)
mgsshhhhhhssgrenlyfqghmsrnllaivhpilrnlmeesgetvnmavldqsdheaii
idqvqcthlmrmsapiggklpmhasgagkaflaqlseeqvtkllhrkglhaythatlvsp
vhlkedlaqtrkrgysfddeehalglrclaacifdehrepfaaisisgpisritddrvte
fgamvikaakevtlayggmrgs

    Sequence, based on observed residues (ATOM records): (download) 
    >1td5C (C:)
hmsrnllaivhpilrnlmeesgetvnmavldqsdheaiiidqvqcthlmrmsapiggklp
mhasgagkaflaqlseeqvtkllhrkglhaythatlvspvhlkedlaqtrkrgysfddee
halglrclaacifdehrepfaaisisgpisritddrvtefgamvikaakevtlayggm

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1td5D (D:)
mgsshhhhhhssgrenlyfqghmsrnllaivhpilrnlmeesgetvnmavldqsdheaii
idqvqcthlmrmsapiggklpmhasgagkaflaqlseeqvtkllhrkglhaythatlvsp
vhlkedlaqtrkrgysfddeehalglrclaacifdehrepfaaisisgpisritddrvte
fgamvikaakevtlayggmrgs

    Sequence, based on observed residues (ATOM records): (download) 
    >1td5D (D:)
ghmsrnllaivhpilrnlmeesgetvnmavldqsdheaiiidqvqcthlmrmsapiggkl
pmhasgagkaflaqlseeqvtkllhrkglhaythatlvspvhlkedlaqtrkrgysfdde
ehalglrclaacifdehrepfaaisisgpisritddrvtefgamvikaakevtlayggmr