PDB entry 1t8y

View 1t8y on RCSB PDB site
Description: Crystal Structure of E.coli AMP Nucleosidase complexed with phosphate
Class: hydrolase
Keywords: alpha-beta-alpha sandwich, alpha-beta fold
Deposited on 2004-05-13, released 2004-08-17
The last revision prior to the SCOP 1.75 freeze date was dated 2004-08-17, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.221
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AMP nucleosidase
    Species: Escherichia coli
    Gene: AMN, B1982, Z3139, ECS2779
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15272 (Start-483)
      • modified residue (137)
      • modified residue (259)
      • modified residue (301)
      • modified residue (403)
    Domains in SCOP 1.75: d1t8ya_
  • Chain 'B':
    Compound: AMP nucleosidase
    Species: Escherichia coli
    Gene: AMN, B1982, Z3139, ECS2779
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15272 (Start-483)
      • modified residue (137)
      • modified residue (259)
      • modified residue (301)
      • modified residue (403)
    Domains in SCOP 1.75: d1t8yb_
  • Chain 'C':
    Compound: AMP nucleosidase
    Species: Escherichia coli
    Gene: AMN, B1982, Z3139, ECS2779
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15272 (Start-483)
      • modified residue (137)
      • modified residue (259)
      • modified residue (301)
      • modified residue (403)
    Domains in SCOP 1.75: d1t8yc_
  • Chain 'D':
    Compound: AMP nucleosidase
    Species: Escherichia coli
    Gene: AMN, B1982, Z3139, ECS2779
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15272 (Start-483)
      • modified residue (137)
      • modified residue (259)
      • modified residue (301)
      • modified residue (403)
    Domains in SCOP 1.75: d1t8yd_
  • Chain 'E':
    Compound: AMP nucleosidase
    Species: Escherichia coli
    Gene: AMN, B1982, Z3139, ECS2779
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15272 (Start-483)
      • modified residue (137)
      • modified residue (259)
      • modified residue (301)
      • modified residue (403)
    Domains in SCOP 1.75: d1t8ye_
  • Chain 'F':
    Compound: AMP nucleosidase
    Species: Escherichia coli
    Gene: AMN, B1982, Z3139, ECS2779
    Database cross-references and differences (RAF-indexed):
    • Uniprot P15272 (Start-483)
      • modified residue (137)
      • modified residue (259)
      • modified residue (301)
      • modified residue (403)
    Domains in SCOP 1.75: d1t8yf_
  • Heterogens: PO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1t8yA (A:)
mnnkgsgltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvt
wdgsttnppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqhe
ipypyvidgseltldrsmsagltryfpttelaqigdetadgiyhptefsplshfdarrvd
fslarlrhytgtpvehfqpfvlftnytryvdefvrwgcsqildpdspyialscaggnwit
aeteapeeaisdlawkkhqmpawhlitadgqgitlvnigvgpsnakticdhlavlrpdvw
lmighcgglresqaigdyvlahaylrddhvldavlppdipipsiaevqralydatklvsg
rpgeevkqrlrtgtvvttddrnwelrysasalrfnlsravaidmesatiaaqgyrfrvpy
gtllcvsdkplhgeiklpgqanrfyegaisehlqigiraidllraegdrlhsrklrtfne
ppfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1t8yA (A:)
ltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvtwdgsttn
ppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqheipypyvi
dgseltldrsmsagltryfpttelfsplshfdarrvdfslarlrhytgtpvehfqpfvlf
tnytryvdefvrwgcsqildpdspyialscaggnwitaeteapeeaisdlawkkhqmpaw
hlitadgqgitlvnigvgpsnakticdhlavlrpdvwlmighcgglresqaigdyvlaha
ylrddhvldavlppdipipsiaevqralydatklvsgrpgeevkqrlrtgtvvttddrnw
elrysasalrfnlsravaidmesatiaaqgyrfrvpygtllcvsdkplhgeiklpgqanr
fyegaisehlqigiraidllraegdrlhsrklrtfneppfr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1t8yB (B:)
mnnkgsgltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvt
wdgsttnppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqhe
ipypyvidgseltldrsmsagltryfpttelaqigdetadgiyhptefsplshfdarrvd
fslarlrhytgtpvehfqpfvlftnytryvdefvrwgcsqildpdspyialscaggnwit
aeteapeeaisdlawkkhqmpawhlitadgqgitlvnigvgpsnakticdhlavlrpdvw
lmighcgglresqaigdyvlahaylrddhvldavlppdipipsiaevqralydatklvsg
rpgeevkqrlrtgtvvttddrnwelrysasalrfnlsravaidmesatiaaqgyrfrvpy
gtllcvsdkplhgeiklpgqanrfyegaisehlqigiraidllraegdrlhsrklrtfne
ppfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1t8yB (B:)
ltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvtwdgsttn
ppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqheipypyvi
dgseltldrsmsagltryfpttelfsplshfdarrvdfslarlrhytgtpvehfqpfvlf
tnytryvdefvrwgcsqildpdspyialscaggnwitaeteapeeaisdlawkkhqmpaw
hlitadgqgitlvnigvgpsnakticdhlavlrpdvwlmighcgglresqaigdyvlaha
ylrddhvldavlppdipipsiaevqralydatklvsgrpgeevkqrlrtgtvvttddrnw
elrysasalrfnlsravaidmesatiaaqgyrfrvpygtllcvsdkplhgeiklpgqanr
fyegaisehlqigiraidllraegdrlhsrklrtfneppfr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1t8yC (C:)
mnnkgsgltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvt
wdgsttnppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqhe
ipypyvidgseltldrsmsagltryfpttelaqigdetadgiyhptefsplshfdarrvd
fslarlrhytgtpvehfqpfvlftnytryvdefvrwgcsqildpdspyialscaggnwit
aeteapeeaisdlawkkhqmpawhlitadgqgitlvnigvgpsnakticdhlavlrpdvw
lmighcgglresqaigdyvlahaylrddhvldavlppdipipsiaevqralydatklvsg
rpgeevkqrlrtgtvvttddrnwelrysasalrfnlsravaidmesatiaaqgyrfrvpy
gtllcvsdkplhgeiklpgqanrfyegaisehlqigiraidllraegdrlhsrklrtfne
ppfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1t8yC (C:)
ltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvtwdgsttn
ppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqheipypyvi
dgseltldrsmsagltryfpttelfsplshfdarrvdfslarlrhytgtpvehfqpfvlf
tnytryvdefvrwgcsqildpdspyialscaggnwitaeteapeeaisdlawkkhqmpaw
hlitadgqgitlvnigvgpsnakticdhlavlrpdvwlmighcgglresqaigdyvlaha
ylrddhvldavlppdipipsiaevqralydatklvsgrpgeevkqrlrtgtvvttddrnw
elrysasalrfnlsravaidmesatiaaqgyrfrvpygtllcvsdkplhgeiklpgqanr
fyegaisehlqigiraidllraegdrlhsrklrtfneppfr

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1t8yD (D:)
mnnkgsgltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvt
wdgsttnppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqhe
ipypyvidgseltldrsmsagltryfpttelaqigdetadgiyhptefsplshfdarrvd
fslarlrhytgtpvehfqpfvlftnytryvdefvrwgcsqildpdspyialscaggnwit
aeteapeeaisdlawkkhqmpawhlitadgqgitlvnigvgpsnakticdhlavlrpdvw
lmighcgglresqaigdyvlahaylrddhvldavlppdipipsiaevqralydatklvsg
rpgeevkqrlrtgtvvttddrnwelrysasalrfnlsravaidmesatiaaqgyrfrvpy
gtllcvsdkplhgeiklpgqanrfyegaisehlqigiraidllraegdrlhsrklrtfne
ppfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1t8yD (D:)
ltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvtwdgsttn
ppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqheipypyvi
dgseltldrsmsagltryfpttelfsplshfdarrvdfslarlrhytgtpvehfqpfvlf
tnytryvdefvrwgcsqildpdspyialscaggnwitaeteapeeaisdlawkkhqmpaw
hlitadgqgitlvnigvgpsnakticdhlavlrpdvwlmighcgglresqaigdyvlaha
ylrddhvldavlppdipipsiaevqralydatklvsgrpgeevkqrlrtgtvvttddrnw
elrysasalrfnlsravaidmesatiaaqgyrfrvpygtllcvsdkplhgeiklpgqanr
fyegaisehlqigiraidllraegdrlhsrklrtfneppfr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1t8yE (E:)
mnnkgsgltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvt
wdgsttnppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqhe
ipypyvidgseltldrsmsagltryfpttelaqigdetadgiyhptefsplshfdarrvd
fslarlrhytgtpvehfqpfvlftnytryvdefvrwgcsqildpdspyialscaggnwit
aeteapeeaisdlawkkhqmpawhlitadgqgitlvnigvgpsnakticdhlavlrpdvw
lmighcgglresqaigdyvlahaylrddhvldavlppdipipsiaevqralydatklvsg
rpgeevkqrlrtgtvvttddrnwelrysasalrfnlsravaidmesatiaaqgyrfrvpy
gtllcvsdkplhgeiklpgqanrfyegaisehlqigiraidllraegdrlhsrklrtfne
ppfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1t8yE (E:)
ltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvtwdgsttn
ppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqheipypyvi
dgseltldrsmsagltryfpttelfsplshfdarrvdfslarlrhytgtpvehfqpfvlf
tnytryvdefvrwgcsqildpdspyialscaggnwitaeteapeeaisdlawkkhqmpaw
hlitadgqgitlvnigvgpsnakticdhlavlrpdvwlmighcgglresqaigdyvlaha
ylrddhvldavlppdipipsiaevqralydatklvsgrpgeevkqrlrtgtvvttddrnw
elrysasalrfnlsravaidmesatiaaqgyrfrvpygtllcvsdkplhgeiklpgqanr
fyegaisehlqigiraidllraegdrlhsrklrtfneppfr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1t8yF (F:)
mnnkgsgltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvt
wdgsttnppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqhe
ipypyvidgseltldrsmsagltryfpttelaqigdetadgiyhptefsplshfdarrvd
fslarlrhytgtpvehfqpfvlftnytryvdefvrwgcsqildpdspyialscaggnwit
aeteapeeaisdlawkkhqmpawhlitadgqgitlvnigvgpsnakticdhlavlrpdvw
lmighcgglresqaigdyvlahaylrddhvldavlppdipipsiaevqralydatklvsg
rpgeevkqrlrtgtvvttddrnwelrysasalrfnlsravaidmesatiaaqgyrfrvpy
gtllcvsdkplhgeiklpgqanrfyegaisehlqigiraidllraegdrlhsrklrtfne
ppfr

    Sequence, based on observed residues (ATOM records): (download) 
    >1t8yF (F:)
ltpaqaldkldalyeqsvvalrnaignyitsgelpdenarkqglfvypsltvtwdgsttn
ppktrafgrfthagsytttitrptlfrsylneqltllyqdygahisvqpsqheipypyvi
dgseltldrsmsagltryfpttelfsplshfdarrvdfslarlrhytgtpvehfqpfvlf
tnytryvdefvrwgcsqildpdspyialscaggnwitaeteapeeaisdlawkkhqmpaw
hlitadgqgitlvnigvgpsnakticdhlavlrpdvwlmighcgglresqaigdyvlaha
ylrddhvldavlppdipipsiaevqralydatklvsgrpgeevkqrlrtgtvvttddrnw
elrysasalrfnlsravaidmesatiaaqgyrfrvpygtllcvsdkplhgeiklpgqanr
fyegaisehlqigiraidllraegdrlhsrklrtfneppfr