SCOPe 2.08: Structural Classification of Proteins

PDB entry 1t8q

View 1t8q on RCSB PDB site
Description: Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli
Class: hydrolase
Keywords: Phosphodiesterase, Structural genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, HYDROLASE
Deposited on 2004-05-13, released 2004-08-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.233
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Glycerophosphoryl diester phosphodiesterase, periplasmic
Species: Escherichia coli [TaxId:562]
Gene: GLPQ, B2239
Database cross-references and differences (RAF-indexed):
- Uniprot P09394
  - modified residue (30)
  - modified residue (45)
  - modified residue (115)
  - modified residue (203)
  - modified residue (205)
  - modified residue (238)
  - modified residue (244)
  - modified residue (260)
  - modified residue (276)
Domains in SCOPe 2.08: d1t8qa_
Chain 'B':
Compound: Glycerophosphoryl diester phosphodiesterase, periplasmic
Species: Escherichia coli [TaxId:562]
Gene: GLPQ, B2239
Database cross-references and differences (RAF-indexed):
- Uniprot P09394
  - modified residue (30)
  - modified residue (45)
  - modified residue (115)
  - modified residue (203)
  - modified residue (205)
  - modified residue (238)
  - modified residue (244)
  - modified residue (260)
  - modified residue (276)
Domains in SCOPe 2.08: d1t8qb_
Chain 'C':
Compound: Glycerophosphoryl diester phosphodiesterase, periplasmic
Species: Escherichia coli [TaxId:562]
Gene: GLPQ, B2239
Database cross-references and differences (RAF-indexed):
- Uniprot P09394
  - modified residue (30)
  - modified residue (45)
  - modified residue (115)
  - modified residue (203)
  - modified residue (205)
  - modified residue (238)
  - modified residue (244)
  - modified residue (260)
  - modified residue (276)
Domains in SCOPe 2.08: d1t8qc_
Chain 'D':
Compound: Glycerophosphoryl diester phosphodiesterase, periplasmic
Species: Escherichia coli [TaxId:562]
Gene: GLPQ, B2239
Database cross-references and differences (RAF-indexed):
- Uniprot P09394
  - modified residue (30)
  - modified residue (45)
  - modified residue (115)
  - modified residue (203)
  - modified residue (205)
  - modified residue (238)
  - modified residue (244)
  - modified residue (260)
  - modified residue (276)
Domains in SCOPe 2.08: d1t8qd_
Heterogens: MG, GOL, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>1t8qA (A:)
snaadsnekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyl
drvtdvadrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksd
frvhtfeeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkd
dkvylqcfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmf
kpgamkqvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpe
ytpdvnqlydalynkagvnglftdfpdkavkflnke

Sequence, based on observed residues (ATOM records): (download)

>1t8qA (A:)
nekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyldrvtdv
adrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksdfrvhtf
eeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkddkvylq
cfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmfkpgamk
qvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpeytpdvn
qlydalynkagvnglftdfpdkavkfln

Chain 'B':
Sequence, based on SEQRES records: (download)

>1t8qB (B:)
snaadsnekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyl
drvtdvadrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksd
frvhtfeeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkd
dkvylqcfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmf
kpgamkqvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpe
ytpdvnqlydalynkagvnglftdfpdkavkflnke

Sequence, based on observed residues (ATOM records): (download)

>1t8qB (B:)
nekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyldrvtdv
adrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksdfrvhtf
eeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkddkvylq
cfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmfkpgamk
qvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpeytpdvn
qlydalynkagvnglftdfpdkavkflnk

Chain 'C':
Sequence, based on SEQRES records: (download)

>1t8qC (C:)
snaadsnekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyl
drvtdvadrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksd
frvhtfeeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkd
dkvylqcfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmf
kpgamkqvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpe
ytpdvnqlydalynkagvnglftdfpdkavkflnke

Sequence, based on observed residues (ATOM records): (download)

>1t8qC (C:)
nekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyldrvtdv
adrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksdfrvhtf
eeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkddkvylq
cfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmfkpgamk
qvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpeytpdvn
qlydalynkagvnglftdfpdkavkfln

Chain 'D':
Sequence, based on SEQRES records: (download)

>1t8qD (D:)
snaadsnekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyl
drvtdvadrfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksd
frvhtfeeeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkd
dkvylqcfdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmf
kpgamkqvaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpe
ytpdvnqlydalynkagvnglftdfpdkavkflnke

Sequence, based on observed residues (ATOM records): (download)

>1t8qD (D:)
ekiviahrgasgylpehtlpakamayaqgadyleqdlvmtkddnlvvlhdhyldrvtdva
drfpdrarkdgryyaidftldeikslkftegfdiengkkvqtypgrfpmgksdfrvhtfe
eeiefvqglnhstgknigiypeikapwfhhqegkdiaaktlevlkkygytgkddkvylqc
fdadelkriknelepkmgmelnlvqliaytdwnetqqkqpdgswvnynydwmfkpgamkq
vaeyadgigpdyhmlieetsqpgnikltgmvqdaqqnklvvhpytvrsdklpeytpdvnq
lydalynkagvnglftdfpdkavkfln