PDB entry 1t61

View 1t61 on RCSB PDB site
Description: crystal structure of collagen IV NC1 domain from placenta basement membrane
Class: structural protein
Keywords: basement membrane, type IV collagen, NC1 domain, STRUCTURAL PROTEIN
Deposited on 2004-05-05, released 2004-09-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 1.5 Å
R-factor: 0.174
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: type iv collagen
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • PDB 1T61
    Domains in SCOPe 2.08: d1t61a1, d1t61a2
  • Chain 'B':
    Compound: type iv collagen
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • PDB 1T61
    Domains in SCOPe 2.08: d1t61b1, d1t61b2
  • Chain 'C':
    Compound: type iv collagen
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1t61c1, d1t61c2
  • Chain 'D':
    Compound: type iv collagen
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • PDB 1T61
    Domains in SCOPe 2.08: d1t61d1, d1t61d2
  • Chain 'E':
    Compound: type iv collagen
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • PDB 1T61
    Domains in SCOPe 2.08: d1t61e1, d1t61e2
  • Chain 'F':
    Compound: type iv collagen
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1t61f1, d1t61f2
  • Heterogens: K, CL, CA, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1t61A (A:)
svdhgflvtrhsqttddpqcppgtkilyhgysllyvqgnerahgqdlgtagsclrkfstm
pflfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmav
hsqtiqipqcptgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrg
tcnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

    Sequence, based on observed residues (ATOM records): (download) 
    >1t61A (A:)
gflvtrhsqttddpqcppgtkilyhgysllyvqgnerahgqdlgtagsclrkfstmpflf
cninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmavhsqt
iqipqcptgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrgtcny
yanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1t61B (B:)
svdhgflvtrhsqttddpqcppgtkilyhgysllyvqgnerahgqdlgtagsclrkfstm
pflfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmav
hsqtiqipqcptgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrg
tcnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

    Sequence, based on observed residues (ATOM records): (download) 
    >1t61B (B:)
flvtrhsqttddpqcppgtkilyhgysllyvqgnerahgqdlgtagsclrkfstmpflfc
ninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmavhsqti
qipqcptgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrgtcnyy
anaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1t61C (C:)
isigyllvkhsqtdqepmcpvgmnklwsgysllyfegqekahnqdlglagsclarfstmp
flycnpgdvcyyasrndksywlsttaplpmmpvaeedirpyisrcsvceapavaiavhsq
dvsiphcpagwrslwigysflmhtaagdegggqslvspgscledfratpfiecngargtc
hyyankysfwlttipeqsfqgtpsadtlkaglirthisrcqvcmknl

    Sequence, based on observed residues (ATOM records): (download) 
    >1t61C (C:)
yllvkhsqtdqepmcpvgmnklwsgysllyfegqekahnqdlglagsclarfstmpflyc
npgdvcyyasrndksywlsttaplpmmpvaeedirpyisrcsvceapavaiavhsqdvsi
phcpagwrslwigysflmhtaagdegggqslvspgscledfratpfiecngargtchyya
nkysfwlttipeqsfqgtpsadtlkaglirthisrcqvcmkn

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1t61D (D:)
svdhgflvtrhsqttddpqcppgtkilyhgysllyvqgnerahgqdlgtagsclrkfstm
pflfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmav
hsqtiqipqcptgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrg
tcnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

    Sequence, based on observed residues (ATOM records): (download) 
    >1t61D (D:)
gflvtrhsqttddpqcppgtkilyhgysllyvqgnerahgqdlgtagsclrkfstmpflf
cninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmavhsqt
iqipqcptgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrgtcny
yanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrr

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1t61E (E:)
svdhgflvtrhsqttddpqcppgtkilyhgysllyvqgnerahgqdlgtagsclrkfstm
pflfcninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmav
hsqtiqipqcptgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrg
tcnyyanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrrt

    Sequence, based on observed residues (ATOM records): (download) 
    >1t61E (E:)
gflvtrhsqttddpqcppgtkilyhgysllyvqgnerahgqdlgtagsclrkfstmpflf
cninnvcnfasrndysywlstpepmpmsmapitgenirpfisrcavceapamvmavhsqt
iqipqcptgwsslwigysfvmhtsagaegsgqalaspgscleefrsapfiechgrgtcny
yanaysfwlatiersemfkkptpstlkagelrthvsrcqvcmrr

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1t61F (F:)
isigyllvkhsqtdqepmcpvgmnklwsgysllyfegqekahnqdlglagsclarfstmp
flycnpgdvcyyasrndksywlsttaplpmmpvaeedirpyisrcsvceapavaiavhsq
dvsiphcpagwrslwigysflmhtaagdegggqslvspgscledfratpfiecngargtc
hyyankysfwlttipeqsfqgtpsadtlkaglirthisrcqvcmknl

    Sequence, based on observed residues (ATOM records): (download) 
    >1t61F (F:)
yllvkhsqtdqepmcpvgmnklwsgysllyfegqekahnqdlglagsclarfstmpflyc
npgdvcyyasrndksywlsttaplpmmpvaeedirpyisrcsvceapavaiavhsqdvsi
phcpagwrslwigysflmhtaagdegggqslvspgscledfratpfiecngargtchyya
nkysfwlttipeqsfqgtpsadtlkaglirthisrcqvcmkn