PDB entry 1t5w
View 1t5w on RCSB PDB site
Description: HLA-DR1 in complex with a synthetic peptide (AAYSDQATPLLLSPR)
Class: immune system
Keywords: MHC class II; najor histocompatibility complex protein; HLA-DR1; antigen; peptide, IMMUNE SYSTEM
Deposited on
2004-05-05, released
2004-08-17
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-19.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.231
AEROSPACI score: 0.31
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1t5wa1, d1t5wa2 - Chain 'B':
Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRB1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1t5wb1, d1t5wb2 - Chain 'C':
Compound: 15-mer peptide fragment of Regulatory protein MIG1
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRA
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1t5wd1, d1t5wd2 - Chain 'E':
Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRB1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1t5we1, d1t5we2 - Chain 'F':
Compound: 15-mer peptide fragment of Regulatory protein MIG1
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1t5wA (A:)
keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1t5wB (B:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1t5wD (D:)
keehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgala
niavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtw
lrngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
Sequence, based on observed residues (ATOM records): (download)
>1t5wD (D:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefd
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1t5wE (E:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra
- Chain 'F':
No sequence available.