PDB entry 1t3m

View 1t3m on RCSB PDB site
Description: Structure of the isoaspartyl peptidase with L-asparaginase activity from E. coli
Class: hydrolase
Keywords: type III l-asparaginase, plant-type asparaginase, isoaspartyl peptidase, hydrolase
Deposited on 2004-04-27, released 2004-07-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.173
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative L-asparaginase
    Species: Escherichia coli [TaxId:562]
    Gene: YBIK, B0828
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1t3m.1
  • Chain 'B':
    Compound: Putative L-asparaginase
    Species: Escherichia coli [TaxId:562]
    Gene: YBIK, B0828
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1t3m.1
  • Chain 'C':
    Compound: Putative L-asparaginase
    Species: Escherichia coli [TaxId:562]
    Gene: YBIK, B0828
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1t3m.2
  • Chain 'D':
    Compound: Putative L-asparaginase
    Species: Escherichia coli [TaxId:562]
    Gene: YBIK, B0828
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1t3m.2
  • Heterogens: NA, NO3, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1t3mA (A:)
gkaviaihggagaisraqmslqqelryiealsaivetgqkmleagesaldvvteavrlle
ecplfnagigavftrdetheldacvmdgntlkagavagvshlrnpvlaarlvmeqsphvm
migegaenfafargmervspeifstslryeqllaarkegatvldhsgapldekqkmg

    Sequence, based on observed residues (ATOM records): (download) 
    >1t3mA (A:)
gkaviaihggagaisraqmslqqelryiealsaivetgqkmleagesaldvvteavrlle
ecplfnagigavftrdetheldacvmdgntlkagavagvshlrnpvlaarlvmeqsphvm
migegaenfafargmervspeifstslryeqllaar

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1t3mB (B:)
tvgavaldldgnlaaatstggmtnklpgrvgdsplvgagcyannasvavsctgtgevfir
alaaydiaalmdygglslaeacervvmeklpalggsggliaidhegnvalpfntegmyra
wgyagdtpttgiyrekgdtvatqhsie

    Sequence, based on observed residues (ATOM records): (download) 
    >1t3mB (B:)
tvgavaldldgnlaaatstggmtnklpgrvgdsplvgagcyannasvavsctgtgevfir
alaaydiaalmdygglslaeacervvmeklpalggsggliaidhegnvalpfntegmyra
wgyagdtpttgiyr

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1t3mC (C:)
gkaviaihggagaisraqmslqqelryiealsaivetgqkmleagesaldvvteavrlle
ecplfnagigavftrdetheldacvmdgntlkagavagvshlrnpvlaarlvmeqsphvm
migegaenfafargmervspeifstslryeqllaarkegatvldhsgapldekqkmg

    Sequence, based on observed residues (ATOM records): (download) 
    >1t3mC (C:)
kaviaihggagaisraqmslqqelryiealsaivetgqkmleagesaldvvteavrllee
cplfnagigavftrdetheldacvmdgntlkagavagvshlrnpvlaarlvmeqsphvmm
igegaenfafargmervspeifstslryeqllaark

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1t3mD (D:)
tvgavaldldgnlaaatstggmtnklpgrvgdsplvgagcyannasvavsctgtgevfir
alaaydiaalmdygglslaeacervvmeklpalggsggliaidhegnvalpfntegmyra
wgyagdtpttgiyrekgdtvatqhsie

    Sequence, based on observed residues (ATOM records): (download) 
    >1t3mD (D:)
tvgavaldldgnlaaatstggmtnklpgrvgdsplvgagcyannasvavsctgtgevfir
alaaydiaalmdygglslaeacervvmeklpalggsggliaidhegnvalpfntegmyra
wgyagdtpttgiyr