PDB entry 1soz

View 1soz on RCSB PDB site
Description: Crystal Structure of DegS protease in complex with an activating peptide
Class: hydrolase
Keywords: stress response, protein quality control, PDZ, UPR, HtrA, hydrolase
Deposited on 2004-03-16, released 2004-06-08
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: 0.213
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Protease degS
    Species: Escherichia coli [TaxId:562]
    Gene: DEGS, HHOB, HTRH, B3235, Z4594, ECS4108
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31137 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d1soza1, d1soza2, d1soza3
  • Chain 'B':
    Compound: Protease degS
    Species: Escherichia coli [TaxId:562]
    Gene: DEGS, HHOB, HTRH, B3235, Z4594, ECS4108
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31137 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d1sozb1, d1sozb2, d1sozb3
  • Chain 'C':
    Compound: Protease degS
    Species: Escherichia coli [TaxId:562]
    Gene: DEGS, HHOB, HTRH, B3235, Z4594, ECS4108
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31137 (1-End)
      • initiating methionine (0)
    Domains in SCOPe 2.08: d1sozc1, d1sozc2, d1sozc3
  • Chain 'D':
    Compound: activating peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 1SOZ (Start-9)
  • Chain 'E':
    Compound: activating peptide
    Database cross-references and differences (RAF-indexed):
    • PDB 1SOZ (Start-9)
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1sozA (A:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sozA (A:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggrivvnevspdgpaanagi
qvndliisvdnkpatmdqvaeirpgsvipvvvlqvtiqeyp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1sozB (B:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sozB (B:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggrivvnegpaanagiqvnd
liisvdnkpaisaletmdqvaeirpgsvipvlqvtiqeypa

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1sozC (C:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirgyigiggreiaplhaqgggidqlqg
ivvnevspdgpaanagiqvndliisvdnkpaisaletmdqvaeirpgsvipvvvmrddkq
ltlqvtiqeypatn

    Sequence, based on observed residues (ATOM records): (download) 
    >1sozC (C:)
mtpasynlavrraapavvnvynrglntnshnqleirtlgsgvimdqrgyiitnkhvinda
dqiivalqdgrvfeallvgsdsltdlavlkinatgglptipinarrvphigdvvlaignp
ynlgqtitqgiisatgriglnptgrqnflqtdasinhgnsggalvnslgelmgintlsfd
ksndgetpegigfaipfqlatkimdklirdgrvirggivvndliisvdnkpatmdqvaei
rpgsviplqvtiqeypa

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.