PDB entry 1slq

View 1slq on RCSB PDB site
Description: Crystal structure of the trimeric state of the rhesus rotavirus VP4 membrane interaction domain, VP5CT
Class: Viral protein
Keywords: beta sandwich, greek key, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein, Viral protein
Deposited on 2004-03-06, released 2004-08-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.308
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp4
    Species: Rotavirus A [TaxId:10969]
    Gene: gene segment 4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1slqa_
  • Chain 'B':
    Compound: vp4
    Species: Rotavirus A [TaxId:10969]
    Gene: gene segment 4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1slqb_
  • Chain 'C':
    Compound: vp4
    Species: Rotavirus A [TaxId:10969]
    Gene: gene segment 4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1slqc_
  • Chain 'D':
    Compound: vp4
    Species: Rotavirus A [TaxId:10969]
    Gene: gene segment 4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1slqd_
  • Chain 'E':
    Compound: vp4
    Species: Rotavirus A [TaxId:10969]
    Gene: gene segment 4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1slqe_
  • Chain 'F':
    Compound: vp4
    Species: Rotavirus A [TaxId:10969]
    Gene: gene segment 4
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1slqf_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1slqA (A:)
aqanedivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytr
dgeevtahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvy
vrslaanlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfr
frltveepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitns
vtvrqdlerqlgelreefnalsqeiamsqlidlallpl

    Sequence, based on observed residues (ATOM records): (download) 
    >1slqA (A:)
divvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytrdgeev
tahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvyvrsla
anlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfrfrltv
eepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitnsvtvrq
dlerqlgelreefnalsqeiamsqlidlal

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1slqB (B:)
aqanedivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytr
dgeevtahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvy
vrslaanlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfr
frltveepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitns
vtvrqdlerqlgelreefnalsqeiamsqlidlallpl

    Sequence, based on observed residues (ATOM records): (download) 
    >1slqB (B:)
ivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytrdgeevt
ahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvyvrslaa
nlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfrfrltve
epsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitnsvtvrqd
lerqlgelreefnalsqeiamsqlidlal

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1slqC (C:)
aqanedivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytr
dgeevtahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvy
vrslaanlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfr
frltveepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitns
vtvrqdlerqlgelreefnalsqeiamsqlidlallpl

    Sequence, based on observed residues (ATOM records): (download) 
    >1slqC (C:)
edivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytrdgee
vtahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvyvrsl
aanlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfrfrlt
veepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitnsvtvr
qdlerqlgelreefnalsqeiamsql

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1slqD (D:)
aqanedivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytr
dgeevtahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvy
vrslaanlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfr
frltveepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitns
vtvrqdlerqlgelreefnalsqeiamsqlidlallpl

    Sequence, based on observed residues (ATOM records): (download) 
    >1slqD (D:)
ivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytrdgeevt
ahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvyvrslaa
nlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfrfrltve
epsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitnsvtvrqd
lerqlgelreefnalsqeiamsqlidl

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1slqE (E:)
aqanedivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytr
dgeevtahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvy
vrslaanlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfr
frltveepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitns
vtvrqdlerqlgelreefnalsqeiamsqlidlallpl

    Sequence, based on observed residues (ATOM records): (download) 
    >1slqE (E:)
sktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytrdgeevtaht
tcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvyvrslaanln
svictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfrfrltveeps
fsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitnsvtvrqdler
qlgelreefnalsqeiamsqlidlall

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1slqF (F:)
aqanedivvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytr
dgeevtahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvy
vrslaanlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfr
frltveepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitns
vtvrqdlerqlgelreefnalsqeiamsqlidlallpl

    Sequence, based on observed residues (ATOM records): (download) 
    >1slqF (F:)
divvsktslwkemqynrditirfkfassivksgglgykwseisfkpanyqytytrdgeev
tahttcsvngmndfnfnggslptdfvisryevikensyvyvdywddsqafrnmvyvrsla
anlnsvictggdysfalpvgqwpvmtggavslhsagvtlstqftdfvslnslrfrfrltv
eepsfsitrtrvsrlyglpaanpnngkeyyevagrfslislvpsnddyqtpitnsvtvrq
dlerqlgelreefnalsqeiamsql