PDB entry 1sje
View 1sje on RCSB PDB site
Description: HLA-DR1 complexed with a 16 residue HIV capsid peptide bound in a hairpin conformation
Class: immune system
Keywords: MHC class II, Major histocompatibility protein complex, HLA-DR1, HIV-1, capsid, Superantigen, Antigen, Peptide, gag, IMMUNE SYSTEM
Deposited on
2004-03-03, released
2004-08-17
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 2.45 Å
R-factor: 0.196
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: hla class II histocompatibility antigen, dr alpha chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRA*0101
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1sjea1, d1sjea2 - Chain 'B':
Compound: HLA class II histocompatibility antigen, DRB1-1 beta chain
Species: Homo sapiens [TaxId:9606]
Gene: HLA-DRB*0101
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1sjeb1, d1sjeb2 - Chain 'C':
Compound: gag polyprotein
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: Enterotoxin type C-3
Species: Staphylococcus aureus [TaxId:1280]
Gene: SEC3
Database cross-references and differences (RAF-indexed):
- Uniprot P0A0L5 (0-238)
- engineered (42)
- engineered (44-46)
Domains in SCOPe 2.06: d1sjed1, d1sjed2 - Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1sjeA (A:)
eehviiqaefylnpdqsgefmfdfdgdeifhvdmakketvwrleefgrfasfeaqgalan
iavdkanleimtkrsnytpitnvppevtvltnspvelrepnvlicfidkftppvvnvtwl
rngkpvttgvsetvflpredhlfrkfhylpflpstedvydcrvehwgldepllkhwefda
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1sjeB (B:)
gdtrprflwqlkfechffngtervrllerciynqeesvrfdsdvgeyravtelgrpdaey
wnsqkdlleqrraavdtycrhnygvgesftvqrrvepkvtvypsktqplqhhnllvcsvs
gfypgsievrwfrngqeekagvvstgliqngdwtfqtlvmletvprsgevytcqvehpsv
tspltvewra
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1sjeD (D:)
esqpdpmpddlhksseftgtmgnmkylyddhyvsatkvksvdsffkwdliynisdkklkn
ydkvktellnedlakkykdevvdvygsnyyvncyfsskdnvgkvtggktcmyggitkheg
nhfdngnlqnvlvrvyenkrntisfevqtdkksvtaqeldikarnflinkknlyefnssp
yetgyikfienngntfwydmmpapgdkfdqskylmmyndnktvdsksvkievhlttkng
Sequence, based on observed residues (ATOM records): (download)
>1sjeD (D:)
esqpdpmpddlhksseftgtmgnmkylyddhyvsatkvksvdsffkwdliynisdkklkn
ydkvktellnedlakkykdevvdvygsnyyvncyfsskggktcmyggitkhegnhfdngn
lqnvlvrvyenkrntisfevqtdkksvtaqeldikarnflinkknlyefnsspyetgyik
fienngntfwydmmpapgdkfdqskylmmyndnktvdsksvkievhlttkng