PDB entry 1sjd

View 1sjd on RCSB PDB site
Description: x-ray structure of o-succinylbenzoate synthase complexed with n-succinyl phenylglycine
Class: lyase, isomerase
Keywords: racemase
Deposited on 2004-03-03, released 2004-06-01
The last revision prior to the SCOP 1.75 freeze date was dated 2004-06-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.87 Å
R-factor: 0.202
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: N-acylamino acid racemase
    Species: Amycolatopsis sp.
    Gene: AAAR
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1sjda1, d1sjda2
  • Chain 'B':
    Compound: N-acylamino acid racemase
    Species: Amycolatopsis sp.
    Gene: AAAR
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1sjdb1, d1sjdb2
  • Chain 'C':
    Compound: N-acylamino acid racemase
    Species: Amycolatopsis sp.
    Gene: AAAR
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1sjdc1, d1sjdc2
  • Chain 'D':
    Compound: N-acylamino acid racemase
    Species: Amycolatopsis sp.
    Gene: AAAR
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1sjdd1, d1sjdd2
  • Heterogens: NPG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1sjdA (A:)
    mklsgvelrrvqmplvapfrtsfgtqsvrellllravtpagegwgecvtmagplysseyn
    dgaehvlrhylipallaaeditaakvtpllakfkghrmakgalemavldaelrahersfa
    aelgsvrdsvpcgvsvgimdtipqlldvvggyldegyvriklkiepgwdvepvravrerf
    gddvllqvdantaytlgdapqlarldpfglllieqpleeedvlghaelarriqtpiclde
    sivsaraaadaiklgavqivnikpgrvggylearrvhdvcaahgipvwcggmietglgra
    anvalaslpnftlpgdtsasdrfyktditepfvlsgghlpvptgpglgvapipelldevt
    takvwigs
    

    Sequence, based on observed residues (ATOM records): (download)
    >1sjdA (A:)
    mklsgvelrrvqmplvapfrtsfgtqsvrellllravtpagegwgecvtmagplysseyn
    dgaehvlrhylipallaaeditaakvtpllakfkghrmakgalemavldaelrahersfa
    aelgsvrdsvpcgvsvgimdtipqlldvvggyldegyvriklkiepgwdvepvravrerf
    gddvllqvdantaytlgdapqlarldpfglllieqpleeedvlghaelarriqtpiclde
    sivsaraaadaiklgavqivnikpgrvggylearrvhdvcaahgipvwcggmietglgra
    anvalaslpnftlpgdtsasdrfyktditepfvlsgghlpvptgpglgvapipelldevt
    takvwig
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1sjdB (B:)
    mklsgvelrrvqmplvapfrtsfgtqsvrellllravtpagegwgecvtmagplysseyn
    dgaehvlrhylipallaaeditaakvtpllakfkghrmakgalemavldaelrahersfa
    aelgsvrdsvpcgvsvgimdtipqlldvvggyldegyvriklkiepgwdvepvravrerf
    gddvllqvdantaytlgdapqlarldpfglllieqpleeedvlghaelarriqtpiclde
    sivsaraaadaiklgavqivnikpgrvggylearrvhdvcaahgipvwcggmietglgra
    anvalaslpnftlpgdtsasdrfyktditepfvlsgghlpvptgpglgvapipelldevt
    takvwigs
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1sjdC (C:)
    mklsgvelrrvqmplvapfrtsfgtqsvrellllravtpagegwgecvtmagplysseyn
    dgaehvlrhylipallaaeditaakvtpllakfkghrmakgalemavldaelrahersfa
    aelgsvrdsvpcgvsvgimdtipqlldvvggyldegyvriklkiepgwdvepvravrerf
    gddvllqvdantaytlgdapqlarldpfglllieqpleeedvlghaelarriqtpiclde
    sivsaraaadaiklgavqivnikpgrvggylearrvhdvcaahgipvwcggmietglgra
    anvalaslpnftlpgdtsasdrfyktditepfvlsgghlpvptgpglgvapipelldevt
    takvwigs
    

    Sequence, based on observed residues (ATOM records): (download)
    >1sjdC (C:)
    mklsgvelrrvqmplvapfrtsfgtqsvrellllravtpagegwgecvtmagplysseyn
    dgaehvlrhylipallaaeditaakvtpllakfkghrmakgalemavldaelrahersfa
    aelgsvrdsvpcgvsvgimdtipqlldvvggyldegyvriklkiepgwdvepvravrerf
    gddvllqvdantaytlgdapqlarldpfglllieqpleeedvlghaelarriqtpiclde
    sivsaraaadaiklgavqivnikpgrvggylearrvhdvcaahgipvwcggmietglgra
    anvalaslpnftlpgdtsasdrfyktditepfvlsgghlpvptgpglgvapipelldevt
    takvwig
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1sjdD (D:)
    mklsgvelrrvqmplvapfrtsfgtqsvrellllravtpagegwgecvtmagplysseyn
    dgaehvlrhylipallaaeditaakvtpllakfkghrmakgalemavldaelrahersfa
    aelgsvrdsvpcgvsvgimdtipqlldvvggyldegyvriklkiepgwdvepvravrerf
    gddvllqvdantaytlgdapqlarldpfglllieqpleeedvlghaelarriqtpiclde
    sivsaraaadaiklgavqivnikpgrvggylearrvhdvcaahgipvwcggmietglgra
    anvalaslpnftlpgdtsasdrfyktditepfvlsgghlpvptgpglgvapipelldevt
    takvwigs
    

    Sequence, based on observed residues (ATOM records): (download)
    >1sjdD (D:)
    mklsgvelrrvqmplvapfrtsfgtqsvrellllravtpagegwgecvtmagplysseyn
    dgaehvlrhylipallaaeditaakvtpllakfkghrmakgalemavldaelrahersfa
    aelgsvrdsvpcgvsvgimdtipqlldvvggyldegyvriklkiepgwdvepvravrerf
    gddvllqvdantaytlgdapqlarldpfglllieqpleeedvlghaelarriqtpiclde
    sivsaraaadaiklgavqivnikpgrvggylearrvhdvcaahgipvwcggmietglgra
    anvalaslpnftlpgdtsasdrfyktditepfvlsgghlpvptgpglgvapipelldevt
    takvwig