PDB entry 1s9v
View 1s9v on RCSB PDB site
Description: Crystal structure of HLA-DQ2 complexed with deamidated gliadin peptide
Class: immune system
Keywords: immune system, hla-dq2
Deposited on
2004-02-05, released
2004-03-02
The last revision prior to the SCOP 1.73 freeze date was dated
2004-04-06, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.22 Å
R-factor: 0.221
AEROSPACI score: 0.35
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: HLA class II histocompatibility antigen, DQ(3) alpha chain
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1s9va1, d1s9va2 - Chain 'B':
Compound: HLA class II histocompatibility antigen, DQ(1) beta chain
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1s9vb1, d1s9vb2 - Chain 'C':
Compound: alpha-I gliadin
Species: synthetic, synthetic
- Chain 'D':
Compound: HLA class II histocompatibility antigen, DQ(3) alpha chain
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1s9vd1, d1s9vd2 - Chain 'E':
Compound: HLA class II histocompatibility antigen, DQ(1) beta chain
Species: HOMO SAPIENS
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1s9ve1, d1s9ve2 - Chain 'F':
Compound: alpha-I gliadin
Species: synthetic, synthetic
- Heterogens: EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1s9vA (A:)
edivadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwclpvlrqfrfdpqf
altniavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvn
itwlsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhw
epeipapmselte
Sequence, based on observed residues (ATOM records): (download)
>1s9vA (A:)
vadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwclpvlrqfrfdpqfalt
niavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvnitw
lsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhwep
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1s9vB (B:)
rdspedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaey
wnsqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsrtealnhhnllvcsvt
dfypaqikvrwfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpsl
qspitvewraqsesaqsk
Sequence, based on observed residues (ATOM records): (download)
>1s9vB (B:)
spedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaeywn
sqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsrnllvcsvtdfypaqikv
rwfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpslqspitvewr
a
- Chain 'C':
No sequence available.
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1s9vD (D:)
edivadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwclpvlrqfrfdpqf
altniavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvn
itwlsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhw
epeipapmselte
Sequence, based on observed residues (ATOM records): (download)
>1s9vD (D:)
vadhvasygvnlyqsygpsgqythefdgdeqfyvdlgrketvwclpvlrqfrfdpqfalt
niavlkhnlnslikrsnstaatnevpevtvfskspvtlgqpniliclvdnifppvvnitw
lsnghsvtegvsetsflsksdhsffkisyltllpsaeesydckvehwgldkpllkhw
- Chain 'E':
Sequence, based on SEQRES records: (download)
>1s9vE (E:)
rdspedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaey
wnsqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsrtealnhhnllvcsvt
dfypaqikvrwfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpsl
qspitvewraqsesaqsk
Sequence, based on observed residues (ATOM records): (download)
>1s9vE (E:)
spedfvyqfkgmcyftngtervrlvsrsiynreeivrfdsdvgefravtllglpaaeywn
sqkdilerkraavdrvcrhnyqlelrttlqrrveptvtispsnllvcsvtdfypaqikvr
wfrndqeetagvvstplirngdwtfqilvmlemtpqrgdvytchvehpslqspitvewra
- Chain 'F':
No sequence available.