PDB entry 1s9f

View 1s9f on RCSB PDB site
Description: DPO with AT matched
Class: transferase/DNA
Keywords: protein-DNA complex, transferase-DNA complex
Deposited on 2004-02-04, released 2005-02-15
The last revision prior to the SCOPe 2.07 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-25.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.205
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: DBH, DPO4, SSO2448
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1s9fa1, d1s9fa2
  • Chain 'B':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: DBH, DPO4, SSO2448
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1s9fb1, d1s9fb2
  • Chain 'C':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: DBH, DPO4, SSO2448
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1s9fc1, d1s9fc2
  • Chain 'D':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: DBH, DPO4, SSO2448
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d1s9fd1, d1s9fd2
  • Chain 'E':
    Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*cp*tp*a)-3'
  • Chain 'F':
    Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*cp*tp*a)-3'
  • Chain 'G':
    Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*cp*tp*a)-3'
  • Chain 'H':
    Compound: 5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*cp*tp*a)-3'
  • Chain 'I':
    Compound: 5'-d(*t*tp*cp*ap*gp*tp*ap*gp*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3'
  • Chain 'J':
    Compound: 5'-d(*t*tp*cp*ap*gp*tp*ap*gp*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3'
  • Chain 'K':
    Compound: 5'-d(*t*tp*cp*ap*gp*tp*ap*gp*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3'
  • Chain 'L':
    Compound: 5'-d(*t*tp*cp*ap*gp*tp*ap*gp*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3'
  • Heterogens: CA, MG, DDY, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1s9fA (A:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
    

    Sequence, based on observed residues (ATOM records): (download)
    >1s9fA (A:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfi
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1s9fB (B:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
    

    Sequence, based on observed residues (ATOM records): (download)
    >1s9fB (B:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfi
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1s9fC (C:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
    

    Sequence, based on observed residues (ATOM records): (download)
    >1s9fC (C:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfi
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1s9fD (D:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
    

    Sequence, based on observed residues (ATOM records): (download)
    >1s9fD (D:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfi
    

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.