PDB entry 1s99

View 1s99 on RCSB PDB site
Description: The structure and function of B. subtilis YkoF gene product: ligand free protein
Class: ligand binding protein
Keywords: YkoF, thiamin-binding protein, ACT-domain family, X-ray structure, LIGAND BINDING PROTEIN
Deposited on 2004-02-04, released 2004-10-05
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.65 Å
R-factor: 0.174
AEROSPACI score: 0.59 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ykoF
    Species: Bacillus subtilis [TaxId:1423]
    Gene: YKOF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34911
      • modified residue (19)
      • engineered (32-33)
      • modified residue (77)
      • modified residue (123)
      • modified residue (129)
      • modified residue (133)
      • modified residue (172)
      • modified residue (182)
    Domains in SCOPe 2.08: d1s99a_
  • Chain 'B':
    Compound: ykoF
    Species: Bacillus subtilis [TaxId:1423]
    Gene: YKOF
    Database cross-references and differences (RAF-indexed):
    • Uniprot O34911
      • modified residue (19)
      • engineered (32-33)
      • modified residue (77)
      • modified residue (123)
      • modified residue (129)
      • modified residue (133)
      • modified residue (172)
      • modified residue (182)
    Domains in SCOPe 2.08: d1s99b_
  • Heterogens: ACT, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1s99A (A:)
    mehicgtsriagfrfslypmtddfisviksalaatdtskvwtktdhistvlrgsidhvfd
    aakaiylhaanseqhivmngtfsigcpgdtqgdtylskgdkrvnedavrglkaeapcqfa
    lypmnepdymglimeavdiakaqgtfvqgvhyaseldgdahdvfstleavfrmaeqqtnh
    itmtvnlsanspsrknrkqg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1s99A (A:)
    riagfrfslypmtddfisviksalaatdtskvwtktdhistvlrgsidhvfdaakaiylh
    aanseqhivmngtfsigcpgdtqgdtyldkrvnedavrglkaeapcqfalypmnepdymg
    limeavdiakaqgtfvqgvhyaseldgdahdvfstleavfrmaeqqtnhitmtvnlsans
    psrknr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1s99B (B:)
    mehicgtsriagfrfslypmtddfisviksalaatdtskvwtktdhistvlrgsidhvfd
    aakaiylhaanseqhivmngtfsigcpgdtqgdtylskgdkrvnedavrglkaeapcqfa
    lypmnepdymglimeavdiakaqgtfvqgvhyaseldgdahdvfstleavfrmaeqqtnh
    itmtvnlsanspsrknrkqg
    

    Sequence, based on observed residues (ATOM records): (download)
    >1s99B (B:)
    riagfrfslypmtddfisviksalaatdtskvwtktdhistvlrgsidhvfdaakaiylh
    aanseqhivmngtfsigcpgdtqgdtydkrvnedavrglkaeapcqfalypmnepdymgl
    imeavdiakaqgtfvqgvhyaseldgdahdvfstleavfrmaeqqtnhitmtvnlsansp