PDB entry 1s2d

View 1s2d on RCSB PDB site
Description: Purine 2'-Deoxyribosyl complex with arabinoside: Ribosylated Intermediate (AraA)
Class: transferase
Keywords: ribosylate intermediate, PTD, AraA, TRANSFERASE
Deposited on 2004-01-08, released 2004-03-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nucleoside 2-deoxyribosyltransferase
    Species: Lactobacillus helveticus [TaxId:1587]
    Gene: ptd, ndtA, ntd_1, BC335_1936, BCM45_08885, BDKNPLJD_00991, DM475_00825, GDZ32_10450, LH5_01102
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1s2da_
  • Chain 'B':
    Compound: nucleoside 2-deoxyribosyltransferase
    Species: Lactobacillus helveticus [TaxId:1587]
    Gene: ptd, ndtA, ntd_1, BC335_1936, BCM45_08885, BDKNPLJD_00991, DM475_00825, GDZ32_10450, LH5_01102
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1s2db_
  • Chain 'C':
    Compound: nucleoside 2-deoxyribosyltransferase
    Species: Lactobacillus helveticus [TaxId:1587]
    Gene: ptd, ndtA, ntd_1, BC335_1936, BCM45_08885, BDKNPLJD_00991, DM475_00825, GDZ32_10450, LH5_01102
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1s2dc_
  • Heterogens: ADE, V3M, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1s2dA (A:)
mkavvptgkiylgspfysdaqreraakakellaknpsiahvffpfddgftdpdeknpeig
girsmvwrdatyqndltgisnatcgvflydmdqlddgsafeigfmramhkpvilvpfteh
pekekkmnlmiaqgvttiidgntefekladynfnecpsnpvrgygiy

    Sequence, based on observed residues (ATOM records): (download) 
    >1s2dA (A:)
mkavvptgkiylgspfysdaqreraakakellaknpsiahvffpfdgftdpdekpeiggi
rsmvwrdatyqndltgisnatcgvflydmdqlddgsafeigfmramhkpvilvpftehpe
kekkmnlmiaqgvttiidgntefekladynfnecpsnpvrgygiy

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s2dB (B:)
mkavvptgkiylgspfysdaqreraakakellaknpsiahvffpfddgftdpdeknpeig
girsmvwrdatyqndltgisnatcgvflydmdqlddgsafeigfmramhkpvilvpfteh
pekekkmnlmiaqgvttiidgntefekladynfnecpsnpvrgygiy

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s2dC (C:)
mkavvptgkiylgspfysdaqreraakakellaknpsiahvffpfddgftdpdeknpeig
girsmvwrdatyqndltgisnatcgvflydmdqlddgsafeigfmramhkpvilvpfteh
pekekkmnlmiaqgvttiidgntefekladynfnecpsnpvrgygiy