PDB entry 1s1h

View 1s1h on RCSB PDB site
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Class: ribosome
Keywords: 80S ribosome, 40S ribosomal subunit, eEF2, tRNA translocation, sordarin, cryo-EM
Deposited on 2004-01-06, released 2004-05-25
The last revision prior to the SCOPe 2.02 freeze date was dated 2009-09-22, with a file datestamp of 2009-09-18.
Experiment type: EM
Resolution: 11.7 Å
R-factor: N/A
AEROSPACI score: -0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 18S Ribosomal RNA
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Chain 'B':
    Compound: 40S ribosomal protein S0-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hb_
  • Chain 'C':
    Compound: 40S ribosomal protein S3
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hc_
  • Chain 'D':
    Compound: 40S ribosomal protein S9-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hd_
  • Chain 'E':
    Compound: 40S ribosomal protein S2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1he_
  • Chain 'G':
    Compound: 40S ribosomal protein S5
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hg_
  • Chain 'H':
    Compound: 40S ribosomal protein S22
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hh_
  • Chain 'I':
    Compound: 40S ribosomal protein S16
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hi_
  • Chain 'J':
    Compound: 40S ribosomal protein S20
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hj_
  • Chain 'K':
    Compound: 40S ribosomal protein S14-A
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hk_
  • Chain 'L':
    Compound: 40S ribosomal protein S23
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hl_
  • Chain 'M':
    Compound: 40S ribosomal protein S18
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hm_
  • Chain 'N':
    Compound: 40S ribosomal protein S29-B
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hn_
  • Chain 'O':
    Compound: 40S ribosomal protein S13
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1ho_
  • Chain 'Q':
    Compound: 40S ribosomal protein S11
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hq_
  • Chain 'S':
    Compound: 40S ribosomal protein S15
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1hs_
  • Chain 'T':
    Compound: Elongation factor 2
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.02: d1s1ht_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s1hB (B:)
aqlllaanthlgarnvqvhqepyvfnarpdgvhvinvgktweklvlaariiaaipnpedv
vaissrtfgqravlkfaahtgatpiagrftpgsftnyitrsfkeprlvivtdprsdaqai
keasyvnipvialtdldspsefvdvaipcnnrgkhsigliwyllarevlrlrgalvdrtq
pwsim

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1s1hC (C:)
valiskkrklvadgvfyaelnefftrelaeegysgvevrvtptkteviiratrtqdvlge
ngrrineltllvqkrfkyapgtivlyaervqdrglsavaqaesmkfkllnglairraayg
vvryvmesgakgcevvvsgklraarakamkfadgflihsgqpvndfidtatrhvlmrqgv
lgikvkimrdpa

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hC (C:)
skkrklvadgvfyaelnefftrelaeegysgvevrvtptkteviiratrtqdvlgengrr
ineltllvqkrfkyapgtivlyaervqdrglsavaqaesmkfkllnglairraaygvvry
vmesgakgcevvvsgklraarakamkfadgflihsgqpvndfidtatrhvlmrqgvlgik
vkimrdpa

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1s1hD (D:)
yessrldaelklagefglknkkeiyrisfqlskirraardlltrdekdpkrlfegnalir
rlvrvgvlsedkkkldyvlalkvedflerrlqtqvyklglaksvhharvlitqrhiavgk
qivnipsfmvrldsekhidfaptspfggarpgrvarrnaarkaeasgeaadeadeadee

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hD (D:)
yessrldaelklagefglknkkeiyrisfqlskirraardlltrdekdpkrlfegnalir
rlvrvgvlsedkkkldyvlalkvedflerrlqtqvyklglaksvhharvlitqrhiavgk
qivnipsfmvrldsekhidfaptspfggarpgrvarrnaarkaeasgeaadeadeade

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s1hE (E:)
glqdevmnikpvqkqtragqrtrfkavvvvgdsnghvglgiktakevagairagiiiakl
svipirrgywgtnlgqphslatkttgkcgsvtvrlipaprgsgivaspavkkllqlagve
dvytqsngktrtlentlkaafvaigntyg

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s1hG (G:)
ryankrfrkaqcpiierltnslmmngrnngkklkavriikhtldiinvltdqnpiqvvvd
aitntgpredttrvggggaarrqavdvsplrrvnqaialltigareaafrniktiaetla
eelinaakgsstsyaikkkdelervaksnr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >1s1hH (H:)
trssvladalnainnaektgkrqvlirpsskviikflqvmqkhgyigefeyiddhrsgki
vvqlngrlnkcgvisprfnvkigdiekwtanllparqfgyvilttsagimdheearrkhv
sgkilgfvy

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hH (H:)
ssvladalnainnaektgkrqvlirpsskviikflqvmqkhgyigefeyiddhrsgkivv
qlngrlnkcgvisprfnvkigdiekwtanllparqfgyvilttsagimdheearrkhvsg
kilgfvy

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >1s1hI (I:)
savpsvqtfgkkksatavahvkagkglikvngspitlvepeilrfkvyeplllvgldkfs
nidirvrvtggghvsqvyairqaiakglvayhqkyvdeqsknelkkaftsydrtlliads
rrpepkkfggkgarsrfqksyr

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hI (I:)
psvqtfgkkksatavahvkagkglikvngspitlvepeilrfkvyeplllvgldkfsnid
irvrvtggghvsqvyairqaiakglvayhqkyvdeqsknelkkaftsydrtlliadsrrp
epkkfggkgarsrfqksyr

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >1s1hJ (J:)
kiritltstkvkqlenvssnivknaeqhnlvkkgpvrlptkvlkistrktpngegsktwe
tyemrihkryidleapvqivkritqitiepgvdvevvasn

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hJ (J:)
kiritltstkvkqlenvssnivknaeqhnlvkkgpvrlptkvlkistrktpngegsktwe
tyemrihkryidleapvqivkritqitiepgvdvevv

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >1s1hK (K:)
snvvqardnsqvfgvariyasfndtfvhvtdlsgketiarvtggmkvkadrdesspyaam
laaqdvaakcrevgitavhvkiratggtrtktpgpggqaalralarsglrigriedvtpv
psdstrkkggrrgrrl

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hK (K:)
dnsqvfgvariyasfndtfvhvtdlsgketiarvtggmkvkadrdesspyaamlaaqdva
akcrevgitavhvkiratggtrtktpgpggqaalralarsglrigriedvtpvpsdstrk
kggrr

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s1hL (L:)
nykkrllgtafksspfggsshakgivleklgieskqpnsairkcvrvqlikngkkvtafv
pndgclnfvdendevllagfgrkgkakgdipgvrfkvvkvsgvsllalwkekkekprs

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >1s1hM (M:)
lrllntnvdgnikivyalttikgvgrrysnlvckkadvdlhkrageltqeelerivqimq
npthykipawflnrqnditdgkdyhtlannvesklrddlerlkkirahrgirhfwglrvr
gqhtkttgrrra

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hM (M:)
lrllntnvdgnikivyalttikgvgrrysnlvckkadvdlhkrageltqeelerivqimq
npthykipawflnrqnditdgkdyhtlannvesklrddlerlkkirahrgirhfwglrvr
gqhtkttgrrr

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >1s1hN (N:)
crvcsshtglvrkydlnicrqcfrekandigfhkyr

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hN (N:)
crvcsshtglvrkydlnicrqcfrekand

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s1hO (O:)
itgnkimrilksnglapeipedlyylikkavsvrkhlernrkdkdakfrliliesrihrl
aryyr

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s1hQ (Q:)
kiltgtvvstkmhrtivirraylhyipkynryekrhknvpvhvspafrvqvgdivtvgqc
rpisktvrfnvvkvsa

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1s1hS (S:)
rgmtskpagfmkklraaklaapenekpapvrthmrnmiivpemigsvvgiyngkafnqve
irpemlghylgefsitytpv

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >1s1hT (T:)
mvaftvdqmrslmdkvtnvrnmsviahvdhgkstltdslvqragiisaakagearftdtr
kdeqergitikstaislysemsdedvkeikqktdgnsflinlidspghvdfssevtaalr
vtdgalvvvdtiegvcvqtetvlrqalgerikpvvvinkvdrallelqvskedlyqtfar
tvesvnvivstyadevlgdvqvypargtvafgsglhgwaftirqfatryakkfgvdkakm
mdrlwgdsffnpktkkwtnkdtdaegkplerafnmfildpifrlftaimnfkkdeipvll
ekleivlkgdekdlegkallkvvmrkflpaadallemivlhlpspvtaqayraeqlyegp
addanciaikncdpkadlmlyvskmvptsdkgrfyafgrvfagtvksgqkvriqgpnyvp
gkkddlfikaiqrvvlmmgrfvepiddcpagniiglvgidqfllktgtlttsetahnmkv
mkfsvspvvqvavevknandlpklveglkrlsksdpcvltymsesgehivagtgelhlei
clqdlehdhagvplkisppvvayretvesessqtalskspnkhnriylkaepideevsla
iengiinprddfkararimaddygwdvtdarkiwcfgpdgngpnlvidqtkavqylheik
dsvvaafqwatkegpifgeemrsvrvnildvtlhadaihrgggqiiptmrratyagflla
dpkiqepvflveiqcpeqavggiysvlnkkrgqvvseeqrpgtplftvkaylpvnesfgf
tgelrqatggqafpqmvfdhwstlgsdpldptskageivlaarkrhgmkeevpgwqeyyd
kl

    Sequence, based on observed residues (ATOM records): (download) 
    >1s1hT (T:)
aftvdqmrslmdkvtnvrnmsviahvdhgkstltdslvqragiisagitikstaislyse
msdedvkeikqktdgnsflinlidspghvdfssevtaalrvtdgalvvvdtiegvcvqte
tvlrqalgerikpvvvinkvdrallelqvskedlyqtfartvesvnvivstyadevlgdv
qvypargtvafgsglhgwaftirqfatryakkfgvdkakmmdrlwgdsffnpktkkwtnk
dtdaegkplerafnmfildpifrlftaimnfkkdeipvllekleivlkgdekdlegkall
kvvmrkflpaadallemivlhlpspvtaqayraeqlyegpaddanciaikncdpkadlml
yvskmvptsdkgrfyafgrvfagtvksgqkvriqgpnyvpgkkddlfikaiqrvvlmmgr
fvepiddcpagniiglvgidqfllktgtlttsetahnmkvmkfsvspvvqvavevknand
lpklveglkrlsksdpcvltymsesgehivagtgelhleiclqdlehdhagvplkisppv
vayretvesessqtalskspnkhnriylkaepideevslaiengiinprddfkararima
ddygwdvtdarkiwcfgpdgngpnlvidqtkavqylheikdsvvaafqwatkegpifgee
mrsvrvnildvtlhadaihrgggqiiptmrratyagflladpkiqepvflveiqcpeqav
ggiysvlnkkrgqvvseeqtplftvkaylpvnesfgftgelrqatggqafpqmvfdhwst
lgsdpldptskageivlaarkrhgmkeevpgwqeyydkl