PDB entry 1rz9

View 1rz9 on RCSB PDB site
Description: Crystal Structure of AAV Rep complexed with the Rep-binding sequence
Class: Viral protein/DNA
Keywords: Protein-DNA complex, Viral protein/DNA COMPLEX
Deposited on 2003-12-24, released 2004-02-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: 0.286
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Rep protein
    Species: Adeno-associated virus - 5 [TaxId:82300]
    Gene: rep
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rz9a_
  • Chain 'B':
    Compound: Rep protein
    Species: Adeno-associated virus - 5 [TaxId:82300]
    Gene: rep
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rz9b_
  • Chain 'C':
    Compound: Rep protein
    Species: Adeno-associated virus - 5 [TaxId:82300]
    Gene: rep
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rz9c_
  • Chain 'D':
    Compound: Rep protein
    Species: Adeno-associated virus - 5 [TaxId:82300]
    Gene: rep
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rz9d_
  • Chain 'E':
    Compound: Rep protein
    Species: Adeno-associated virus - 5 [TaxId:82300]
    Gene: rep
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rz9e_
  • Chain 'F':
    Compound: 26-mer
  • Chain 'G':
    Compound: 26-mer

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rz9A (A:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaessqrs

    Sequence, based on observed residues (ATOM records): (download) 
    >1rz9A (A:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaes

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1rz9B (B:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaessqrs

    Sequence, based on observed residues (ATOM records): (download) 
    >1rz9B (B:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaes

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1rz9C (C:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaessqrs

    Sequence, based on observed residues (ATOM records): (download) 
    >1rz9C (C:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaes

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1rz9D (D:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaessqrs

    Sequence, based on observed residues (ATOM records): (download) 
    >1rz9D (D:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaes

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >1rz9E (E:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaessqrs

    Sequence, based on observed residues (ATOM records): (download) 
    >1rz9E (E:)
matfyevivrvpfdveehlpgisdsfvdwvtgqiwelppesdlnltlveqpqltvadrir
rvflyewnkfskqeskffvqfekgseyfhlhtlvetsgissmvlgryvsqiraqlvkvvf
qgiepqindwvaitkvkkggankvvdsgyipayllpkvqpelqwawtnldeyklaalnle
erkrlvaqflaes

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.