PDB entry 1rys
View 1rys on RCSB PDB site
Description: replication of a cis-syn thymine dimer at atomic resolution
Class: transferase/DNA
Keywords: cpd dimer, lesion bypass, polymerase
Deposited on
2003-12-22, released
2004-02-10
The last revision prior to the SCOP 1.75 freeze date was dated
2004-02-10, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: 0.221
AEROSPACI score: 0.52
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: Sulfolobus solfataricus
Gene: DPO4
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1rysa1, d1rysa2 - Chain 'B':
Compound: DNA polymerase IV
Species: Sulfolobus solfataricus
Gene: DPO4
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1rysb1, d1rysb2 - Chain 'C':
Compound: 5'-d(*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*cp*a)-3'
- Chain 'D':
Compound: 5'-d(*tp*cp*tp*tp*tp*gp*ap*ap*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3'
- Chain 'E':
Compound: 5'-d(*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*cp*a)-3'
- Chain 'F':
Compound: 5'-d(*tp*cp*tp*tp*tp*gp*ap*ap*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3'
- Heterogens: CA, NA, ATP, EDO, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1rysA (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>1rysA (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1rysB (B:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>1rysB (B:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.