PDB entry 1rxq

View 1rxq on RCSB PDB site
Description: YfiT from Bacillus subtilis is a probable metal-dependent hydrolase with an unusual four-helix bundle topology
Class: metal-binding protein
Keywords: Nickel-binding, hydrolase, helix-bundle, Structural Genomics, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, metal-binding protein
Deposited on 2003-12-18, released 2004-07-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: 0.188
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: yfiT
    Species: Bacillus subtilis [TaxId:1423]
    Gene: yfiT
    Database cross-references and differences (RAF-indexed):
    • GB NP_388720 (Start-177)
      • modified residue (44)
      • modified residue (72)
      • modified residue (174)
    Domains in SCOPe 2.08: d1rxqa_
  • Chain 'B':
    Compound: yfiT
    Species: Bacillus subtilis [TaxId:1423]
    Gene: yfiT
    Database cross-references and differences (RAF-indexed):
    • GB NP_388720 (Start-177)
      • modified residue (44)
      • modified residue (72)
      • modified residue (174)
    Domains in SCOPe 2.08: d1rxqb_
  • Chain 'C':
    Compound: yfiT
    Species: Bacillus subtilis [TaxId:1423]
    Gene: yfiT
    Database cross-references and differences (RAF-indexed):
    • GB NP_388720 (Start-177)
      • modified residue (44)
      • modified residue (72)
      • modified residue (174)
    Domains in SCOPe 2.08: d1rxqc_
  • Chain 'D':
    Compound: yfiT
    Species: Bacillus subtilis [TaxId:1423]
    Gene: yfiT
    Database cross-references and differences (RAF-indexed):
    • GB NP_388720 (Start-177)
      • modified residue (44)
      • modified residue (72)
      • modified residue (174)
    Domains in SCOPe 2.08: d1rxqd_
  • Heterogens: NI, GLU, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rxqA (A:)
mtsvnlsypigeykpresiskeqkdkwiqvleevpaklkqavevmtdsqldtpyrdggwt
vrqvvhhladshmnsyirfklslteetpairpydekawselkdsktadpsgslallqelh
grwtallrtltdqqfkrgfyhpdtkeiitlenalglyvwhshhhiahitelsrrmgws

    Sequence, based on observed residues (ATOM records): (download) 
    >1rxqA (A:)
nlsypigeykpresiskeqkdkwiqvleevpaklkqavevmtdsqldtpyrdggwtvrqv
vhhladshmnsyirfklslteetpairpydekawselkdsktadpsgslallqelhgrwt
allrtltdqqfkrgfyhpdtkeiitlenalglyvwhshhhiahitelsrrmgws

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1rxqB (B:)
mtsvnlsypigeykpresiskeqkdkwiqvleevpaklkqavevmtdsqldtpyrdggwt
vrqvvhhladshmnsyirfklslteetpairpydekawselkdsktadpsgslallqelh
grwtallrtltdqqfkrgfyhpdtkeiitlenalglyvwhshhhiahitelsrrmgws

    Sequence, based on observed residues (ATOM records): (download) 
    >1rxqB (B:)
vnlsypigeykpresiskeqkdkwiqvleevpaklkqavevmtdsqldtpyrdggwtvrq
vvhhladshmnsyirfklslteetpairpydekawselkdsktadpsgslallqelhgrw
tallrtltdqqfkrgfyhpdtkeiitlenalglyvwhshhhiahitelsrrmgws

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1rxqC (C:)
mtsvnlsypigeykpresiskeqkdkwiqvleevpaklkqavevmtdsqldtpyrdggwt
vrqvvhhladshmnsyirfklslteetpairpydekawselkdsktadpsgslallqelh
grwtallrtltdqqfkrgfyhpdtkeiitlenalglyvwhshhhiahitelsrrmgws

    Sequence, based on observed residues (ATOM records): (download) 
    >1rxqC (C:)
nlsypigeykpresiskeqkdkwiqvleevpaklkqavevmtdsqldtpyrdggwtvrqv
vhhladshmnsyirfklslteetpairpydekawselkdsktadpsgslallqelhgrwt
allrtltdqqfkrgfyhpdtkeiitlenalglyvwhshhhiahitelsrrmgws

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1rxqD (D:)
mtsvnlsypigeykpresiskeqkdkwiqvleevpaklkqavevmtdsqldtpyrdggwt
vrqvvhhladshmnsyirfklslteetpairpydekawselkdsktadpsgslallqelh
grwtallrtltdqqfkrgfyhpdtkeiitlenalglyvwhshhhiahitelsrrmgws

    Sequence, based on observed residues (ATOM records): (download) 
    >1rxqD (D:)
igeykpresiskeqkdkwiqvleevpaklkqavevmtdsqldtpyrdggwtvrqvvhhla
dshmnsyirfklslteetpairpydekawselkdsktadpsgslallqelhgrwtallrt
ltdqqfkrgfyhpdtkeiitlenalglyvwhshhhiahitelsrrmgws