PDB entry 1ruo

View 1ruo on RCSB PDB site
Description: catabolite gene activator protein (cap) mutant/DNA complex + adenosine-3',5'-cyclic-monophosphate
Class: transcription/DNA
Keywords: gene-regulatory protein/DNA complex, complex (gene-regulatory protein/DNA), transcription regulation, DNA-binding, camp-binding, activator, transcription/DNA complex
Deposited on 1996-05-26, released 1997-01-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.213
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (catabolite gene activator protein (cap))
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0ACJ8
      • engineered (180)
    Domains in SCOPe 2.08: d1ruoa1, d1ruoa2
  • Chain 'B':
    Compound: protein (catabolite gene activator protein (cap))
    Species: Escherichia coli [TaxId:562]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0ACJ8 (Start-208)
      • engineered (180)
    Domains in SCOPe 2.08: d1ruob1, d1ruob2
  • Chain 'C':
    Compound: DNA (5'-d(*gp*cp*gp*ap*ap*ap*ap*ap*tp*gp*tp*gp*ap*t)-3')
  • Chain 'D':
    Compound: DNA (5'-d(*cp*tp*ap*gp*ap*tp*cp*ap*cp*ap*tp*tp*tp*tp*tp*cp*g )-3')
  • Chain 'E':
    Compound: DNA (5'-d(*gp*cp*gp*ap*ap*ap*ap*ap*tp*gp*tp*gp*ap*t)-3')
  • Chain 'F':
    Compound: DNA (5'-d(*cp*tp*ap*gp*ap*tp*cp*ap*cp*ap*tp*tp*tp*tp*tp*cp*g )-3')
  • Heterogens: CMP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1ruoA (A:)
vlgkpqtdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemi
lsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqm
arrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsr
ftvgrilkmledqnlisahgktivvygtr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ruoA (A:)
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsrftvgrilk
mledqnlisahgktivvy

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1ruoB (B:)
vlgkpqtdptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemi
lsylnqgdfigelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqm
arrlqvtsekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsr
ftvgrilkmledqnlisahgktivvygtr

    Sequence, based on observed residues (ATOM records): (download) 
    >1ruoB (B:)
ptlewflshchihkypskstlihqgekaetlyyivkgsvavlikdeegkemilsylnqgd
figelglfeegqersawvraktacevaeisykkfrqliqvnpdilmrlsaqmarrlqvts
ekvgnlafldvtgriaqtllnlakqpdamthpdgmqikitrqeigqivgcsrftvgrilk
mledqnlisahgktivvygtr

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.