PDB entry 1rpu

View 1rpu on RCSB PDB site
Description: Crystal Structure of CIRV p19 bound to siRNA
Class: RNA Binding Protein/RNA
Keywords: RNAi, PROTEIN-RNA COMPLEX, RNA DOUBLE HELIX, RNA LENGTH RECOGNITION, RNA Binding Protein-RNA COMPLEX
Deposited on 2003-12-03, released 2004-01-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2017-10-11, with a file datestamp of 2017-10-06.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 19 kDa protein
    Species: Carnation Italian ringspot virus [TaxId:39443]
    Gene: p19
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rpua_
  • Chain 'B':
    Compound: 19 kDa protein
    Species: Carnation Italian ringspot virus [TaxId:39443]
    Gene: p19
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rpub_
  • Chain 'C':
    Compound: 5'-r(p*cp*gp*up*ap*cp*gp*cp*gp*up*cp*ap*cp*gp*cp*gp*up*ap*cp*gp*up*u)-3'
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: 5'-r(p*cp*gp*up*ap*cp*gp*cp*gp*up*cp*ap*cp*gp*cp*gp*up*ap*cp*gp*up*u)-3'
    Species: synthetic, synthetic
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rpuA (A:)
meraiqgndtreqangerwdggsggitspfklpdespswtewrlyndetnsnqdnplgfk
eswgfgkvvfkrylrydrteaslhrvlgswtgdsvnyaasrflganqvgctysirfrgvs
vtisggsrtlqhlcemairskqellqltpvevesnvsrgcpegietfkkese

    Sequence, based on observed residues (ATOM records): (download) 
    >1rpuA (A:)
ndtreqangerwdggsggitspfklpdespswtewrlyndenplgfkeswgfgkvvfkry
lrydrteaslhrvlgswtgdsvnyaasrflganqvgctysirfrgvsvtisggsrtlqhl
cemairskqellqltpvev

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1rpuB (B:)
meraiqgndtreqangerwdggsggitspfklpdespswtewrlyndetnsnqdnplgfk
eswgfgkvvfkrylrydrteaslhrvlgswtgdsvnyaasrflganqvgctysirfrgvs
vtisggsrtlqhlcemairskqellqltpvevesnvsrgcpegietfkkese

    Sequence, based on observed residues (ATOM records): (download) 
    >1rpuB (B:)
ndtreqangerwdggsggitspfklpdespswtewrlyndenplgfkeswgfgkvvfkry
lrydrteaslhrvlgswtgdsvnyaasrflganqvgctysirfrgvsvtisggsrtlqhl
cemairskqellqltp

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.