PDB entry 1rpn

View 1rpn on RCSB PDB site
Description: Crystal Structure of GDP-D-mannose 4,6-dehydratase in complexes with GDP and NADPH
Class: lyase
Keywords: short-chain dehydrogenase/reductase, Rossmann fold, LYASE
Deposited on 2003-12-03, released 2004-02-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 2.15 Å
R-factor: 0.174
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: GDP-mannose 4,6-dehydratase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: GCA, PA5453
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rpna_
  • Chain 'B':
    Compound: GDP-mannose 4,6-dehydratase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: GCA, PA5453
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rpnb_
  • Chain 'C':
    Compound: GDP-mannose 4,6-dehydratase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: GCA, PA5453
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rpnc_
  • Chain 'D':
    Compound: GDP-mannose 4,6-dehydratase
    Species: Pseudomonas aeruginosa [TaxId:287]
    Gene: GCA, PA5453
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1rpnd_
  • Heterogens: NDP, GDP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rpnA (A:)
mrgshhhhhhgsmtrsalvtgitgqdgaylaklllekgyrvhglvarrssdtrwrlrelg
iegdiqyedgdmadacsvqravikaqpqevynlaaqsfvgaswnqpvttgvvdglgvthl
leairqfspetrfyqastsemfgliqaerqdentpfyprspygvaklyghwitvnyresf
glhassgilfnhesplrgiefvtrkvtdavariklgkqqelrlgnvdakrdwgfagdyve
amwlmlqqdkaddyvvatgvtttvrdmcqiafehvgldyrdflkidpaffrpaevdvllg
npakaqrvlgwkprtsldelirmmveadlrrvsre

    Sequence, based on observed residues (ATOM records): (download) 
    >1rpnA (A:)
rsalvtgitgqdgaylaklllekgyrvhglvarrssdtrwrlrelgiegdiqyedgdmad
acsvqravikaqpqevynlaaqsfvgaswnqpvttgvvdglgvthlleairqfspetrfy
qastsemfgliqaerqdentpfyprspygvaklyghwitvnyresfglhassgilfnhes
plrgiefvtrkvtdavariklgkqqelrlgnvdakrdwgfagdyveamwlmlqqdkaddy
vvatgvtttvrdmcqiafehvgldyrdflkidpaffrpaevdvllgnpakaqrvlgwkpr
tsldelirmmveadlrrvsre

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1rpnB (B:)
mrgshhhhhhgsmtrsalvtgitgqdgaylaklllekgyrvhglvarrssdtrwrlrelg
iegdiqyedgdmadacsvqravikaqpqevynlaaqsfvgaswnqpvttgvvdglgvthl
leairqfspetrfyqastsemfgliqaerqdentpfyprspygvaklyghwitvnyresf
glhassgilfnhesplrgiefvtrkvtdavariklgkqqelrlgnvdakrdwgfagdyve
amwlmlqqdkaddyvvatgvtttvrdmcqiafehvgldyrdflkidpaffrpaevdvllg
npakaqrvlgwkprtsldelirmmveadlrrvsre

    Sequence, based on observed residues (ATOM records): (download) 
    >1rpnB (B:)
rsalvtgitgqdgaylaklllekgyrvhglvarrssdtrwrlrelgiegdiqyedgdmad
acsvqravikaqpqevynlaaqsfvgaswnqpvttgvvdglgvthlleairqfspetrfy
qastsemfgliqaerqdentpfyprspygvaklyghwitvnyresfglhassgilfnhes
plrgiefvtrkvtdavariklgkqqelrlgnvdakrdwgfagdyveamwlmlqqdkaddy
vvatgvtttvrdmcqiafehvgldyrdflkidpaffrpaevdvllgnpakaqrvlgwkpr
tsldelirmmveadlrrvsre

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1rpnC (C:)
mrgshhhhhhgsmtrsalvtgitgqdgaylaklllekgyrvhglvarrssdtrwrlrelg
iegdiqyedgdmadacsvqravikaqpqevynlaaqsfvgaswnqpvttgvvdglgvthl
leairqfspetrfyqastsemfgliqaerqdentpfyprspygvaklyghwitvnyresf
glhassgilfnhesplrgiefvtrkvtdavariklgkqqelrlgnvdakrdwgfagdyve
amwlmlqqdkaddyvvatgvtttvrdmcqiafehvgldyrdflkidpaffrpaevdvllg
npakaqrvlgwkprtsldelirmmveadlrrvsre

    Sequence, based on observed residues (ATOM records): (download) 
    >1rpnC (C:)
trsalvtgitgqdgaylaklllekgyrvhglvarrssdtrwrlrelgiegdiqyedgdma
dacsvqravikaqpqevynlaaqsfvgaswnqpvttgvvdglgvthlleairqfspetrf
yqastsemfgliqaerqdentpfyprspygvaklyghwitvnyresfglhassgilfnhe
splrgiefvtrkvtdavariklgkqqelrlgnvdakrdwgfagdyveamwlmlqqdkadd
yvvatgvtttvrdmcqiafehvgldyrdflkidpaffrpaevdvllgnpakaqrvlgwkp
rtsldelirmmveadlrrvsre

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >1rpnD (D:)
mrgshhhhhhgsmtrsalvtgitgqdgaylaklllekgyrvhglvarrssdtrwrlrelg
iegdiqyedgdmadacsvqravikaqpqevynlaaqsfvgaswnqpvttgvvdglgvthl
leairqfspetrfyqastsemfgliqaerqdentpfyprspygvaklyghwitvnyresf
glhassgilfnhesplrgiefvtrkvtdavariklgkqqelrlgnvdakrdwgfagdyve
amwlmlqqdkaddyvvatgvtttvrdmcqiafehvgldyrdflkidpaffrpaevdvllg
npakaqrvlgwkprtsldelirmmveadlrrvsre

    Sequence, based on observed residues (ATOM records): (download) 
    >1rpnD (D:)
trsalvtgitgqdgaylaklllekgyrvhglvarrssdtrwrlrelgiegdiqyedgdma
dacsvqravikaqpqevynlaaqsfvgaswnqpvttgvvdglgvthlleairqfspetrf
yqastsemfgliqaerqdentpfyprspygvaklyghwitvnyresfglhassgilfnhe
splrgiefvtrkvtdavariklgkqqelrlgnvdakrdwgfagdyveamwlmlqqdkadd
yvvatgvtttvrdmcqiafehvgldyrdflkidpaffrpaevdvllgnpakaqrvlgwkp
rtsldelirmmveadlrrvsre