PDB entry 1rky

View 1rky on RCSB PDB site
Description: PPLO + Xe
Class: oxidoreductase
Keywords: PPLO, lysyl oxidase, CAO, CuAO, copper-containing, amine oxidase, oxygen binding site, dioxygen binding site, xenon, TPQ, quinone, trihydroxyphenylalanine quinone
Deposited on 2003-11-24, released 2004-12-07
The last revision prior to the SCOP 1.73 freeze date was dated 2004-12-07, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.68 Å
R-factor: 0.151
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: lysyl oxidase
    Species: Pichia pastoris
    Gene: ATCC 28, 485
    Database cross-references and differences (RAF-indexed):
    • GB AAK49976
      • conflict (273)
      • conflict (297)
      • conflict (376)
      • modified residue (437)
      • conflict (508)
      • conflict (536)
      • conflict (538)
      • conflict (609)
      • conflict (717)
      • conflict (720)
    Domains in SCOP 1.73: d1rkya1, d1rkya2, d1rkya3
  • Heterogens: NAG, CU, CA, MG, CL, IMD, XE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rkyA (A:)
asaecvsnenveieapktniwtslakeevqevldllhstynitevtkadffsnyvlwiet
lkpnktealtyldedgdlpprnartvvyfgegeegyfeelkvgplpvsdettieplsfyn
tngksklpfevghldriksaakssflnknlnttimrdvlegligvpyedmgchsaapqlh
dpatgatvdygtcnintendaenlvptgfffkfdmtgrdvsqwkmleyiynnkvytsaee
lyeamqkddfvtlpkidvdnldwtviqrndsapvrhlddrksprlvepegrrwaydgdee
yfswmdwgfytswsrdtgisfyditfkgerivyelslqeliaeygsddpfnqhtfysdis
ygvgnrfslvpgydcpstagyfttdtfeydefynrtlsycvfenqedysllrhtgasysa
itqnptlnvrfistignydynflykffldgtlevsvraagyiqagywnpetsapyglkih
dvlsgsfhdhvlnykvdldvggtknrasqyvmkdvdveypwapgtvyntkqiarevfene
dfnginwpengqgilliesaeetnsfgnpraynimpggggvhrivknsrsgpetqnwars
nlfltkhkdtelrsstalntnalydppvnfnaflddesldgedivawvnlglhhlpnsnd
lpntifstahasfmltpfnyfdsensrdttqqvfytyddeteesnwefygndwsscgvev
aepnfedytygrgtrinkkmtnsdevy

    Sequence, based on observed residues (ATOM records): (download) 
    >1rkyA (A:)
aecvsnenveieapktniwtslakeevqevldllhstynitevtkadffsnyvlwietlk
pnktealtyldedgdlpprnartvvyfgegeegyfeelkvgplpvsdettieplsfyntn
gksklpfevghldriksaakssflnknlnttimrdvlegligvpyedmgchsaapqlhdp
atgatvdygtcnintendaenlvptgfffkfdmtgrdvsqwkmleyiynnkvytsaeely
eamqkddfvtlpkidvdnldwtviqrndsapvrhlddrksprlvepegrrwaydgdeeyf
swmdwgfytswsrdtgisfyditfkgerivyelslqeliaeygsddpfnqhtfysdisyg
vgnrfslvpgydcpstagyfttdtfeydefynrtlsycvfenqedysllrhtgasysait
qnptlnvrfistignydynflykffldgtlevsvraagyiqagywnpetsapyglkihdv
lsgsfhdhvlnykvdldvggtknrasqyvmkdvdveypwapgtvyntkqiarevfenedf
nginwpengqgilliesaeetnsfgnpraynimpggggvhrivknsrsgpetqnwarsnl
fltkhkdtelrsstalntnalydppvnfnaflddesldgedivawvnlglhhlpnsndlp
ntifstahasfmltpfnyfdsensrdttqqvfytyddeteesnwefygndwsscgvevae
pnfedytygrgtrin