PDB entry 1rkx

View 1rkx on RCSB PDB site
Description: Crystal Structure at 1.8 Angstrom of CDP-D-glucose 4,6-dehydratase from Yersinia pseudotuberculosis
Class: lyase
Keywords: Dehydratase, SDR, CDP Glucose dehydratase
Deposited on 2003-11-23, released 2004-03-30
The last revision prior to the SCOP 1.73 freeze date was dated 2004-03-30, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.229
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CDP-glucose-4,6-dehydratase
    Species: Yersinia pseudotuberculosis
    Gene: ascB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1rkxa_
  • Chain 'B':
    Compound: CDP-glucose-4,6-dehydratase
    Species: Yersinia pseudotuberculosis
    Gene: ascB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1rkxb_
  • Chain 'C':
    Compound: CDP-glucose-4,6-dehydratase
    Species: Yersinia pseudotuberculosis
    Gene: ascB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1rkxc_
  • Chain 'D':
    Compound: CDP-glucose-4,6-dehydratase
    Species: Yersinia pseudotuberculosis
    Gene: ascB
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1rkxd_
  • Heterogens: NAD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1rkxA (A:)
    minnsfwqgkrvfvtghtgfkggwlslwlqtmgatvkgysltaptvpslfetarvadgmq
    seigdirdqnkllesirefqpeivfhmaaqplvrlsysepvetystnvmgtvylleairh
    vggvkavvnitsdkcydnkewiwgyreneamggydpysnskgcaelvtssyrnsffnpan
    ygqhgtavatvragnvigggdwaldrivpdilrafeqsqpviirnphairpwqhvlepls
    gylllaqklytdgaeyaegwnfgpndadatpvkniveqmvkywgegaswqldgnahphea
    hylkldcskakmqlgwhprwnlnttleyivgwhknwlsgtdmheysiteinnymntk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1rkxA (A:)
    innsfwqgkrvfvtghtgfkggwlslwlqtmgatvkgysltaptvpslfetarvadgmqs
    eigdirdqnkllesirefqpeivfhmaaqplvrlsysepvetystnvmgtvylleairhv
    ggvkavvnitsdkcydnkewiwgyreneamggydpysnskgcaelvtssyrnsffnpany
    gqhgtavatvragnvigggdwaldrivpdilrafeqsqpviirnphairpwqhvleplsg
    ylllaqklytdgaeyaegwnfgpndadatpvkniveqmvkywgegaswqleahylkldcs
    kakmqlgwhprwnlnttleyivgwhknwlsgtdmheysiteinnymntk
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1rkxB (B:)
    minnsfwqgkrvfvtghtgfkggwlslwlqtmgatvkgysltaptvpslfetarvadgmq
    seigdirdqnkllesirefqpeivfhmaaqplvrlsysepvetystnvmgtvylleairh
    vggvkavvnitsdkcydnkewiwgyreneamggydpysnskgcaelvtssyrnsffnpan
    ygqhgtavatvragnvigggdwaldrivpdilrafeqsqpviirnphairpwqhvlepls
    gylllaqklytdgaeyaegwnfgpndadatpvkniveqmvkywgegaswqldgnahphea
    hylkldcskakmqlgwhprwnlnttleyivgwhknwlsgtdmheysiteinnymntk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1rkxB (B:)
    innsfwqgkrvfvtghtgfkggwlslwlqtmgatvkgysltaptvpslfetarvadgmqs
    eigdirdqnkllesirefqpeivfhmaaqplvrlsysepvetystnvmgtvylleairhv
    ggvkavvnitsdkcydnkewiwgyreneamggydpysnskgcaelvtssyrnsffnpany
    gqhgtavatvragnvigggdwaldrivpdilrafeqsqpviirnphairpwqhvleplsg
    ylllaqklytdgaeyaegwnfgpndadatpvkniveqmvkywgegaswqhylkldcskak
    mqlgwhprwnlnttleyivgwhknwlsgtdmheysiteinnymntk
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1rkxC (C:)
    minnsfwqgkrvfvtghtgfkggwlslwlqtmgatvkgysltaptvpslfetarvadgmq
    seigdirdqnkllesirefqpeivfhmaaqplvrlsysepvetystnvmgtvylleairh
    vggvkavvnitsdkcydnkewiwgyreneamggydpysnskgcaelvtssyrnsffnpan
    ygqhgtavatvragnvigggdwaldrivpdilrafeqsqpviirnphairpwqhvlepls
    gylllaqklytdgaeyaegwnfgpndadatpvkniveqmvkywgegaswqldgnahphea
    hylkldcskakmqlgwhprwnlnttleyivgwhknwlsgtdmheysiteinnymntk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1rkxC (C:)
    innsfwqgkrvfvtghtgfkggwlslwlqtmgatvkgysltaptvpslfetarvadgmqs
    eigdirdqnkllesirefqpeivfhmaaqplvrlsysepvetystnvmgtvylleairhv
    ggvkavvnitsdkcydnkewiwgyreneamggydpysnskgcaelvtssyrnsffnpany
    gqhgtavatvragnvigggdwaldrivpdilrafeqsqpviirnphairpwqhvleplsg
    ylllaqklytdgaeyaegwnfgpndadatpvkniveqmvkywgegaswqlpheahylkld
    cskakmqlgwhprwnlnttleyivgwhknwlsgtdmheysiteinnymntk
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1rkxD (D:)
    minnsfwqgkrvfvtghtgfkggwlslwlqtmgatvkgysltaptvpslfetarvadgmq
    seigdirdqnkllesirefqpeivfhmaaqplvrlsysepvetystnvmgtvylleairh
    vggvkavvnitsdkcydnkewiwgyreneamggydpysnskgcaelvtssyrnsffnpan
    ygqhgtavatvragnvigggdwaldrivpdilrafeqsqpviirnphairpwqhvlepls
    gylllaqklytdgaeyaegwnfgpndadatpvkniveqmvkywgegaswqldgnahphea
    hylkldcskakmqlgwhprwnlnttleyivgwhknwlsgtdmheysiteinnymntk
    

    Sequence, based on observed residues (ATOM records): (download)
    >1rkxD (D:)
    innsfwqgkrvfvtghtgfkggwlslwlqtmgatvkgysltaptvpslfetarvadgmqs
    eigdirdqnkllesirefqpeivfhmaaqplvrlsysepvetystnvmgtvylleairhv
    ggvkavvnitsdkcydnkewiwgyreneamggydpysnskgcaelvtssyrnsffnpany
    gqhgtavatvragnvigggdwaldrivpdilrafeqsqpviirnphairpwqhvleplsg
    ylllaqklytdgaeyaegwnfgpndadatpvkniveqmvkywgegaswqlhylkldcska
    kmqlgwhprwnlnttleyivgwhknwlsgtdmheysiteinnymntk