PDB entry 1rkq

View 1rkq on RCSB PDB site
Description: Crystal structure of HAD-like phosphatase yidA from E. coli
Class: structural genomics, unknown function
Keywords: Two domain structure with beta-alpha sandwich. Stucture contains a Magnesium Ion., PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, structural genomics, unknown function
Deposited on 2003-11-23, released 2004-03-09
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.4 Å
R-factor: 0.177
AEROSPACI score: 0.7 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hypothetical protein yidA
    Species: Escherichia coli [TaxId:562]
    Gene: YIDA, B3697, C4619, SF3767, S4004
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A8Y5 (3-271)
      • cloning artifact (1-2)
      • conflict (238)
    Domains in SCOPe 2.06: d1rkqa1, d1rkqa2
  • Chain 'B':
    Compound: Hypothetical protein yidA
    Species: Escherichia coli [TaxId:562]
    Gene: YIDA, B3697, C4619, SF3767, S4004
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A8Y5 (3-271)
      • cloning artifact (1-2)
      • conflict (238)
    Domains in SCOPe 2.06: d1rkqb1, d1rkqb2
  • Heterogens: CL, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rkqA (A:)
mslaikliaidmdgtlllpdhtispavknaiaaarargvnvvlttgrpyagvhnylkelh
meqpgdycityngalvqkaadgstvaqtalsyddyrfleklsrevgshfhaldrttlyta
nrdisyytvhesfvatiplvfceaekmdpntqflkvmmidepaildqaiaripqevkeky
tvlksapyfleildkrvnkgtgvksladvlgikpeeimaigdqendiamieyagvgvavd
naipsvkevanfvtksnledgvafaiekyvlneggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1rkqA (A:)
slaikliaidmdgtlllpdhtispavknaiaaarargvnvvlttgrpyagvhnylkelhm
eqpgdycityngalvqkaadgstvaqtalsyddyrfleklsrevgshfhaldrttlytan
rdisyytvhesfvatiplvfceaekmdpntqflkvmmidepaildqaiaripqevkekyt
vlksapyfleildkrvnkgtgvksladvlgikpeeimaigdqendiamieyagvgvavdn
aipsvkevanfvtksnledgvafaiekyvln

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1rkqB (B:)
mslaikliaidmdgtlllpdhtispavknaiaaarargvnvvlttgrpyagvhnylkelh
meqpgdycityngalvqkaadgstvaqtalsyddyrfleklsrevgshfhaldrttlyta
nrdisyytvhesfvatiplvfceaekmdpntqflkvmmidepaildqaiaripqevkeky
tvlksapyfleildkrvnkgtgvksladvlgikpeeimaigdqendiamieyagvgvavd
naipsvkevanfvtksnledgvafaiekyvlneggshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1rkqB (B:)
slaikliaidmdgtlllpdhtispavknaiaaarargvnvvlttgrpyagvhnylkelhm
eqpgdycityngalvqkaadgstvaqtalsyddyrfleklsrevgshfhaldrttlytan
rdisyytvhesfvatiplvfceaekmdpntqflkvmmidepaildqaiaripqevkekyt
vlksapyfleildkrvnkgtgvksladvlgikpeeimaigdqendiamieyagvgvavdn
aipsvkevanfvtksnledgvafaiekyvln