PDB entry 1rk3

View 1rk3 on RCSB PDB site
Description: crystal structure of the rat vitamin D receptor ligand binding domain complexed with 1,25-dihydroxyvitamin D3 and a synthetic peptide containing the NR2 box of DRIP 205
Class: hormone/growth factor receptor
Keywords: nuclear receptor-ligand complex, nuclear receptor-coactivator interactions, hormone/growth factor receptor COMPLEX
Deposited on 2003-11-20, released 2004-04-13
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.2 Å
R-factor: 0.193
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vitamin D3 receptor
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Vdr, Nr1i1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1rk3a_
  • Chain 'C':
    Compound: Peroxisome proliferator-activated receptor binding protein
    Database cross-references and differences (RAF-indexed):
  • Heterogens: VDX, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rk3A (A:)
lkdslrpklseeqqhiiailldahhktydptyadfrdfrppvrmdgstgsvtldlsplsm
lphladlvsysiqkvigfakmipgfrdltsddqivllkssaievimlrsnqsftmddmsw
dcgsqdykydvtdvskaghtlelieplikfqvglkklnlheeehvllmaicivspdrpgv
qdaklveaiqdrlsntlqtyircrhpppgshqlyakmiqkladlrslneehskqyrslsf
qpensmkltplvlevfgneislvprgsmaisdpnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1rk3A (A:)
klseeqqhiiailldahhktydptyadfrdfrppvrmplsmlphladlvsysiqkvigfa
kmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdykydvtdvskagh
tlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklveaiqdrlsntlqt
yircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpensmkltplvlevfgn

  • Chain 'C':
    No sequence available.