PDB entry 1rjy
View 1rjy on RCSB PDB site
Description: Mhc Class I Natural Mutant H-2Kbm8 Heavy Chain Complexed With beta-2 Microglobulin and Herpes Simplex Virus Glycoprotein B Peptide
Class: immune system
Keywords: MHC, class I, peptide, virus, TCR, herpes
Deposited on
2003-11-20, released
2004-12-14
The last revision prior to the SCOP 1.75 freeze date was dated
2004-12-14, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: 0.229
AEROSPACI score: 0.57
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: h-2 class I histocompatibility antigen, k-b alpha chain
Species: MUS MUSCULUS
Gene: H2-K
Database cross-references and differences (RAF-indexed):
- Uniprot P01901 (0-End)
- engineered (21-23)
- engineered (29)
Domains in SCOP 1.75: d1rjya1, d1rjya2 - Chain 'B':
Compound: Beta-2-microglobulin
Species: MUS MUSCULUS
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1rjyb_ - Chain 'D':
Compound: h-2 class I histocompatibility antigen, k-b alpha chain
Species: MUS MUSCULUS
Gene: H2-K
Database cross-references and differences (RAF-indexed):
- Uniprot P01901 (0-End)
- engineered (21-23)
- engineered (29)
Domains in SCOP 1.75: d1rjyd1, d1rjyd2 - Chain 'E':
Compound: Beta-2-microglobulin
Species: MUS MUSCULUS
Gene: B2M
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.75: d1rjye_ - Chain 'P':
Compound: Glycoprotein B
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: Glycoprotein B
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1rjyA (A:)
gphslryfvtavsrpglgeprfisvgyvdntefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrwepppst
Sequence, based on observed residues (ATOM records): (download)
>1rjyA (A:)
gphslryfvtavsrpglgeprfisvgyvdntefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrweppp
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1rjyB (B:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1rjyD (D:)
gphslryfvtavsrpglgeprfisvgyvdntefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrwepppst
Sequence, based on observed residues (ATOM records): (download)
>1rjyD (D:)
gphslryfvtavsrpglgeprfisvgyvdntefvrfdsdaenpryeprarwmeqegpeyw
eretqkakgneqsfrvdlrtllgyynqskggshtiqvisgcevgsdgrllrgyqqyaydg
cdyialnedlktwtaadmaalitkhkweqageaerlraylegtcvewlrrylkngnatll
rtdspkahvthhsrpedkvtlrcwalgfypaditltwqlngeeliqdmelvetrpagdgt
fqkwasvvvplgkeqyytchvyhqglpepltlrweppp
- Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)
>1rjyE (E:)
miqktpqiqvysrhppengkpnilncyvtqfhpphieiqmlkngkkipkvemsdmsfskd
wsfyilahteftptetdtyacrvkhdsmaepktvywdrdm
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.