PDB entry 1rjk

View 1rjk on RCSB PDB site
Description: crystal structure of the rat vitamin D receptor ligand binding domain complexed with 2MD and a synthetic peptide containing the NR2 box of DRIP 205
Class: hormone/growth factor receptor
Keywords: nuclear receptor-superagonist complex, nuclear receptor-coactivator interactions,
Deposited on 2003-11-19, released 2004-04-13
The last revision prior to the SCOP 1.73 freeze date was dated 2004-04-13, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: 0.188
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vitamin D3 receptor
    Species: Rattus norvegicus
    Gene: Vdr, Nr1i1
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1rjka_
  • Chain 'C':
    Compound: Peroxisome proliferator-activated receptor binding protein
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
  • Heterogens: VDZ, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rjkA (A:)
lkdslrpklseeqqhiiailldahhktydptyadfrdfrppvrmdgstgsvtldlsplsm
lphladlvsysiqkvigfakmipgfrdltsddqivllkssaievimlrsnqsftmddmsw
dcgsqdykydvtdvskaghtlelieplikfqvglkklnlheeehvllmaicivspdrpgv
qdaklveaiqdrlsntlqtyircrhpppgshqlyakmiqkladlrslneehskqyrslsf
qpensmkltplvlevfgneislvprgsmaisdpnsssvdklaaalehhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1rjkA (A:)
klseeqqhiiailldahhktydptyadfrdfrppvrmplsmlphladlvsysiqkvigfa
kmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdykydvtdvskagh
tlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklveaiqdrlsntlqt
yircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpensmkltplvlevfgn

  • Chain 'C':
    No sequence available.