PDB entry 1rjk
View 1rjk on RCSB PDB site
Description: crystal structure of the rat vitamin D receptor ligand binding domain complexed with 2MD and a synthetic peptide containing the NR2 box of DRIP 205
Class: hormone/growth factor receptor
Keywords: nuclear receptor-superagonist complex, nuclear receptor-coactivator interactions,
Deposited on
2003-11-19, released
2004-04-13
The last revision prior to the SCOP 1.73 freeze date was dated
2004-04-13, with a file datestamp of
2007-06-04.
Experiment type: XRAY
Resolution: 1.99 Å
R-factor: 0.188
AEROSPACI score: 0.47
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Vitamin D3 receptor
Species: Rattus norvegicus
Gene: Vdr, Nr1i1
Database cross-references and differences (RAF-indexed):
Domains in SCOP 1.73: d1rjka_ - Chain 'C':
Compound: Peroxisome proliferator-activated receptor binding protein
Species: synthetic, synthetic
Database cross-references and differences (RAF-indexed):
- Heterogens: VDZ, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1rjkA (A:)
lkdslrpklseeqqhiiailldahhktydptyadfrdfrppvrmdgstgsvtldlsplsm
lphladlvsysiqkvigfakmipgfrdltsddqivllkssaievimlrsnqsftmddmsw
dcgsqdykydvtdvskaghtlelieplikfqvglkklnlheeehvllmaicivspdrpgv
qdaklveaiqdrlsntlqtyircrhpppgshqlyakmiqkladlrslneehskqyrslsf
qpensmkltplvlevfgneislvprgsmaisdpnsssvdklaaalehhhhhh
Sequence, based on observed residues (ATOM records): (download)
>1rjkA (A:)
klseeqqhiiailldahhktydptyadfrdfrppvrmplsmlphladlvsysiqkvigfa
kmipgfrdltsddqivllkssaievimlrsnqsftmddmswdcgsqdykydvtdvskagh
tlelieplikfqvglkklnlheeehvllmaicivspdrpgvqdaklveaiqdrlsntlqt
yircrhpppgshqlyakmiqkladlrslneehskqyrslsfqpensmkltplvlevfgn
- Chain 'C':
No sequence available.