PDB entry 1rh5

View 1rh5 on RCSB PDB site
Description: The structure of a protein conducting channel
Class: protein transport
Keywords: Protein translocation, SecY, Membrane Protein, Protein Channels, PROTEIN TRANSPORT
Deposited on 2003-11-13, released 2004-01-06
The last revision prior to the SCOPe 2.05 freeze date was dated 2009-02-24, with a file datestamp of 2009-02-03.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: 0.242
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Preprotein translocase secY subunit
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: SECY, MJ0478
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q60175
      • engineered (421-422)
    Domains in SCOPe 2.05: d1rh5a_
  • Chain 'B':
    Compound: Preprotein translocase secE subunit
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Gene: SECE, MJ0371
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.05: d1rh5b_
  • Chain 'C':
    Compound: SecBeta
    Species: Methanocaldococcus jannaschii [TaxId:2190]
    Database cross-references and differences (RAF-indexed):
    • PDB 1RH5
    Domains in SCOPe 2.05: d1rh5c_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1rh5A (A:)
mkklipilekipevelpvkeitfkeklkwtgivlvlyfimgcidvytagaqipaifefwq
titasrigtlitlgigpivtagiimqllvgsgiiqmdlsipenralfqgcqkllsiimcf
veavlfvgagafgiltpllaflviiqiafgsiiliyldeivskygigsgiglfiaagvsq
tifvgalgpegylwkflnsliqgvpnieyiapiigtiivflmvvyaecmrveiplahgri
kgavgkypikfvyvsnipvilaaalfaniqlwglalyrmgipilghyeggravdgiayyl
stpyglssvisdpihaivymiamiitcvmfgifwvettgldpksmakrigslgmaikgfr
ksekaiehrlkryippltvmssafvgflatianfigalgggtgvlltvsivyrmyeqllr
ertselhpaiakllnk

    Sequence, based on observed residues (ATOM records): (download) 
    >1rh5A (A:)
kklipilekipevelpvkeitfkeklkwtgivlvlyfimgcidvytagaqipaifefwqt
itasrigtlitlgigpivtagiimqllvgsgiiqmdlsipenralfqgcqkllsiimcfv
eavlfvgagafgiltpllaflviiqiafgsiiliyldeivskygigsgiglfiaagvsqt
ifvgalgpegylwkflnsliqgvpnieyiapiigtiivflmvvyaecmrveiplahgrik
gavgkypikfvyvsnipvilaaalfaniqlwglalyrmgipilghyeggravdgiayyls
tpyglssvisdpihaivymiamiitcvmfgifwvettgldpksmakrisekaiehrlkry
ippltvmssafvgflatianfigalgggtgvlltvsivyrmyeqllrert

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1rh5B (B:)
mktdfnqkieqlkefieecrrvwlvlkkptkdeylavakvtalgisllgiigyiihvpat
yikgilkppttprv

    Sequence, based on observed residues (ATOM records): (download) 
    >1rh5B (B:)
lkefieecrrvwlvlkkptkdeylavakvtalgisllgiigyiihvpatyikgilk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >1rh5C (C:)
mskreetglatsaglirymdetfskirvkpehvigvtvafviieailtygrfl

    Sequence, based on observed residues (ATOM records): (download) 
    >1rh5C (C:)
etfskirvkpehvigvtvafviieailtygrf