PDB entry 1rd3
View 1rd3 on RCSB PDB site
Description: 2.5A Structure of Anticoagulant Thrombin Variant E217K
Class: hydrolase
Keywords: hydrolase
Deposited on
2003-11-05, released
2004-05-04
The last revision prior to the SCOPe 2.01 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.229
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Prothrombin
Species: Homo sapiens [TaxId:9606]
Gene: F2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1rd3.1 - Chain 'B':
Compound: Prothrombin
Species: Homo sapiens [TaxId:9606]
Gene: F2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1rd3.1 - Chain 'C':
Compound: Prothrombin
Species: Homo sapiens [TaxId:9606]
Gene: F2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1rd3.2 - Chain 'D':
Compound: Prothrombin
Species: Homo sapiens [TaxId:9606]
Gene: F2
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.01: d1rd3.2 - Heterogens: PO4, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1rd3A (A:)
tfgsgeadcglrplfekksledkterellesyidgr
Sequence, based on observed residues (ATOM records): (download)
>1rd3A (A:)
tfgsgeadcglrplfekksledkterellesyi
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1rd3B (B:)
ivegsdaeigmspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftendll
vrigkhsrtryerniekismlekiyihprynwrenldrdialmklkkpvafsdyihpvcl
pdretaasllqagykgrvtgwgnlketwtanvgkgqpsvlqvvnlpiverpvckdstrir
itdnmfcagykpdegkrgdacegdsggpfvmkspfnnrwyqmgivswgkgcdrdgkygfy
thvfrlkkwiqkvidqfge
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1rd3C (C:)
tfgsgeadcglrplfekksledkterellesyidgr
Sequence, based on observed residues (ATOM records): (download)
>1rd3C (C:)
sgeadcglrplfekksledkterellesyid
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1rd3D (D:)
ivegsdaeigmspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftendll
vrigkhsrtryerniekismlekiyihprynwrenldrdialmklkkpvafsdyihpvcl
pdretaasllqagykgrvtgwgnlketwtanvgkgqpsvlqvvnlpiverpvckdstrir
itdnmfcagykpdegkrgdacegdsggpfvmkspfnnrwyqmgivswgkgcdrdgkygfy
thvfrlkkwiqkvidqfge
Sequence, based on observed residues (ATOM records): (download)
>1rd3D (D:)
ivegsdaeigmspwqvmlfrkspqellcgaslisdrwvltaahcllyppwdknftendll
vrigkhsrtryerniekismlekiyihprynwrenldrdialmklkkpvafsdyihpvcl
pdretaasllqagykgrvtgwgnlketwtanvgkgqpsvlqvvnlpiverpvckdstrir
itdnmfcagykpdegkrgdacegdsggpfvmkspfnnrwyqmgivswgkgcdrdgkygfy
thvfrlkkwiqkvidqfg