PDB entry 1rb8

View 1rb8 on RCSB PDB site
Description: The phiX174 DNA binding protein J in two different capsid environments.
Class: Virus/DNA
Keywords: bacteriophage alpha3, bacteriophage phiX174, bacteriophage alpha3 chimera, alpha3, phiX174, three-dimentional structure, virion, Microviridae, Icosahedral virus, Virus/DNA COMPLEX
Deposited on 2003-11-03, released 2004-04-13
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: 0.234
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'F':
    Compound: capsid protein
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P08767 (Start-430)
      • see remark 999 (159)
    Domains in SCOPe 2.03: d1rb8f_
  • Chain 'G':
    Compound: Major spike protein
    Species: Enterobacteria phage alpha3 [TaxId:10849]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1rb8g_
  • Chain 'J':
    Compound: Small core protein
    Species: Enterobacteria phage phiX174 sensu lato [TaxId:10847]
    Gene: J
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: DNA (5'-d(p*cp*ap*ap*a)-3')
  • Heterogens: DC

PDB Chain Sequences:

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >1rb8F (F:)
msnvqtsaereivdlshlafdcgmlgrlktvswtpviagdsfeldavgalrlsplrrgla
idskvdfftfyiphrhvygdqwiqfmrdgvnaqplpsvtcnrypdhagyvgtivpannri
pkflhqsylniynnyfrapwmperteanpsnlneddarygfrcchlkniwsaplppetkl
aeemgiesnsidimglqaayaqlhteqertyfmqryrdvissfggstsydadnrpllvmh
tdfwasgydvdgtdqsslgqfsgrvqqtfkhsvprffvpehgvmmtlalirfppispleh
hylagksqltytdlagdpalignlppreisyrdlfrdgrsgikikvaesiwyrthpdyvn
fkyhdlhgfpflddapgtstgdnlqeailvrhqdydacfqsqqllqwnkqarynvsvyrh
mptvrdsimts

    Sequence, based on observed residues (ATOM records): (download) 
    >1rb8F (F:)
reivdlshlafdcgmlgrlktvswtpviagdsfeldavgalrlsplrrglaidskvdfft
fyiphrhvygdqwiqfmrdgvnaqplpsvtcnrypdhagyvgtivpannripkflhqsyl
niynnyfrapwmperteanpsnlneddarygfrcchlkniwsaplppetklaeemgiesn
sidimglqaayaqlhteqertyfmqryrdvissfggstsydadnrpllvmhtdfwasgyd
vdgtdqsslgqfsgrvqqtfkhsvprffvpehgvmmtlalirfppisplehhylagksql
tytdlagdpalignlppreisyrdlfrdgrsgikikvaesiwyrthpdyvnfkyhdlhgf
pflddapgtstgdnlqeailvrhqdydacfqsqqllqwnkqarynvsvyrhmptvrdsim
ts

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1rb8G (G:)
myqnfvtkhdtaiqtsrfsvtgnvipaaptgnipvinggsitaeravvnlyanmnvstss
dgsfivamkvdtsptdpncvisagvnlsfagtsypivgivrfesaseqptsiagsevehy
piemsvgsggvcsardcatvdihprtsgnnvfvgvicssakwtsgrvigtiattqvihey
qvlqplk

  • Chain 'J':
    No sequence available.

  • Chain 'X':
    No sequence available.