PDB entry 1ram
View 1ram on RCSB PDB site
Description: a novel DNA recognition mode by nf-kb p65 homodimer
Class: transcription/DNA
Keywords: complex (transcription factor/DNA), DNA-binding, transcription regulation, rel, activator, nuclear protein, phosphorylation, conformation, transcription/DNA complex
Deposited on
1997-11-22, released
1998-05-27
The last revision prior to the SCOPe 2.07 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.222
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: protein (transcription factor nf-kb p65)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1rama1, d1rama2 - Chain 'B':
Compound: protein (transcription factor nf-kb p65)
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d1ramb1, d1ramb2 - Chain 'C':
Compound: DNA (5'-d(*cp*gp*gp*cp*tp*gp*gp*ap*ap*ap*tp*tp*tp*cp*cp*ap*gp*cp*cp*g)-3')
- Chain 'D':
Compound: DNA (5'-d(*cp*gp*gp*cp*tp*gp*gp*ap*ap*ap*tp*tp*tp*cp*cp*ap*gp*cp*cp*g)-3')
- Heterogens: DTT, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1ramA (A:)
pyveiieqpkqrgmrfrykcegrsagsipgerstdttkthptikingytgpgtvrislvt
kdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnn
npfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnrapntaelkicr
vnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppya
dpslqapvrvsmqlrrpsdrelsepmefqylpd
- Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)
>1ramB (B:)
pyveiieqpkqrgmrfrykcegrsagsipgerstdttkthptikingytgpgtvrislvt
kdpphrphphelvgkdcrdgyyeadlcpdrsihsfqnlgiqcvkkrdleqaisqriqtnn
npfhvpieeqrgdydlnavrlcfqvtvrdpagrpllltpvlshpifdnrapntaelkicr
vnrnsgsclggdeifllcdkvqkedievyftgpgweargsfsqadvhrqvaivfrtppya
dpslqapvrvsmqlrrpsdrelsepmefqylpd
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.