PDB entry 1r5t
View 1r5t on RCSB PDB site
Description: The Crystal Structure of Cytidine Deaminase CDD1, an Orphan C to U editase from Yeast
Class: hydrolase
Keywords: Zinc Dependent Deaminase, RNA editing, APOBEC-1 related protein, HYDROLASE
Deposited on
2003-10-13, released
2004-05-25
The last revision prior to the SCOPe 2.06 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2 Å
R-factor: 0.188
AEROSPACI score: 0.44
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Cytidine deaminase
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: Cdd1p
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1r5ta_ - Chain 'B':
Compound: Cytidine deaminase
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: Cdd1p
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1r5tb_ - Chain 'C':
Compound: Cytidine deaminase
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: Cdd1p
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1r5tc_ - Chain 'D':
Compound: Cytidine deaminase
Species: Saccharomyces cerevisiae [TaxId:4932]
Gene: Cdd1p
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.06: d1r5td_ - Heterogens: ZN, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1r5tA (A:)
mkvggiedrqlealkraalkacelsyspyshfrvgcsiltnndviftganvenasysnci
caersamiqvlmaghrsgwkcmvicgdsedqcvspcgvcrqfinefvvkdfpivmlnstg
srskvmtmgellpmafgpshln
Sequence, based on observed residues (ATOM records): (download)
>1r5tA (A:)
kvggiedrqlealkraalkacelsyspyshfrvgcsiltnndviftganvenasysncic
aersamiqvlmaghrsgwkcmvicgdsedqcvspcgvcrqfinefvvkdfpivmlnstgs
rskvmtmgellpmafgpshln
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1r5tB (B:)
mkvggiedrqlealkraalkacelsyspyshfrvgcsiltnndviftganvenasysnci
caersamiqvlmaghrsgwkcmvicgdsedqcvspcgvcrqfinefvvkdfpivmlnstg
srskvmtmgellpmafgpshln
Sequence, based on observed residues (ATOM records): (download)
>1r5tB (B:)
mkvggiedrqlealkraalkacelsyspyshfrvgcsiltnndviftganvenasysnci
caersamiqvlmaghrsgwkcmvicgdsedqcvspcgvcrqfinefvvkdfpivmlnstg
srskvmtmgellpmafgps
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1r5tC (C:)
mkvggiedrqlealkraalkacelsyspyshfrvgcsiltnndviftganvenasysnci
caersamiqvlmaghrsgwkcmvicgdsedqcvspcgvcrqfinefvvkdfpivmlnstg
srskvmtmgellpmafgpshln
Sequence, based on observed residues (ATOM records): (download)
>1r5tC (C:)
kvggiedrqlealkraalkacelsyspyshfrvgcsiltnndviftganvenasysncic
aersamiqvlmaghrsgwkcmvicgdsedqcvspcgvcrqfinefvvkdfpivmlnstgs
rskvmtmgellpmafgpshl
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1r5tD (D:)
mkvggiedrqlealkraalkacelsyspyshfrvgcsiltnndviftganvenasysnci
caersamiqvlmaghrsgwkcmvicgdsedqcvspcgvcrqfinefvvkdfpivmlnstg
srskvmtmgellpmafgpshln
Sequence, based on observed residues (ATOM records): (download)
>1r5tD (D:)
vggiedrqlealkraalkacelsyspyshfrvgcsiltnndviftganvenasysncica
ersamiqvlmaghrsgwkcmvicgdsedqcvspcgvcrqfinefvvkdfpivmlnstgsr
skvmtmgellpmaf