PDB entry 1qy9
View 1qy9 on RCSB PDB site
Description: Crystal structure of E. coli Se-MET protein YDDE
Class: unknown function
Keywords: putative phenazine biosynthesis protein; epimerase; antibiotic biosynthesis protein; structural genomics, unknown function
Deposited on
2003-09-10, released
2004-06-08
The last revision prior to the SCOPe 2.07 freeze date was dated
2011-07-13, with a file datestamp of
2011-05-08.
Experiment type: XRAY
Resolution: 2.05 Å
R-factor: 0.172
AEROSPACI score: 0.46
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Hypothetical protein yddE
Species: Escherichia coli [TaxId:562]
Gene: YDDE
Database cross-references and differences (RAF-indexed):
- Uniprot P37757 (Start-296)
- modified residue (34)
- modified residue (164)
- modified residue (211)
- modified residue (231)
- modified residue (263)
Domains in SCOPe 2.07: d1qy9a1, d1qy9a2 - Chain 'B':
Compound: Hypothetical protein yddE
Species: Escherichia coli [TaxId:562]
Gene: YDDE
Database cross-references and differences (RAF-indexed):
- Uniprot P37757 (Start-296)
- modified residue (34)
- modified residue (164)
- modified residue (211)
- modified residue (231)
- modified residue (263)
Domains in SCOPe 2.07: d1qy9b1, d1qy9b2 - Chain 'C':
Compound: Hypothetical protein yddE
Species: Escherichia coli [TaxId:562]
Gene: YDDE
Database cross-references and differences (RAF-indexed):
- Uniprot P37757 (Start-296)
- modified residue (34)
- modified residue (164)
- modified residue (211)
- modified residue (231)
- modified residue (263)
Domains in SCOPe 2.07: d1qy9c1, d1qy9c2 - Chain 'D':
Compound: Hypothetical protein yddE
Species: Escherichia coli [TaxId:562]
Gene: YDDE
Database cross-references and differences (RAF-indexed):
- Uniprot P37757 (0-296)
- modified residue (0)
- modified residue (34)
- modified residue (164)
- modified residue (211)
- modified residue (231)
- modified residue (263)
Domains in SCOPe 2.07: d1qy9d1, d1qy9d2 - Heterogens: OH, GOL, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1qy9A (A:)
mkpqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvri
ryftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleq
gtpgfepplegetraaiinalhlteddilpglpiqvattghskvmiplkpevdidalspd
lnaltaiskkigcngffpfqirpgknetdgrmfspaigivedpvtgnangpmgawlvhhn
vlphdgnvlrvkghqgralgrdgmievtvtirdnqpekvtisgtavilfhaewaiel
Sequence, based on observed residues (ATOM records): (download)
>1qy9A (A:)
pqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvriry
ftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleqgt
pgfepplegetraaiinalhlteddilpglpiqvattghskvmiplkpevdidalspdln
altaiskkigcngffpfqirpgknetdgrmfspaigivedpvtgnangpmgawlvhhnvl
phdgnvlrvkghqgralgrdgmievtvtirdnqpekvtisgtavilfhaewaiel
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1qy9B (B:)
mkpqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvri
ryftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleq
gtpgfepplegetraaiinalhlteddilpglpiqvattghskvmiplkpevdidalspd
lnaltaiskkigcngffpfqirpgknetdgrmfspaigivedpvtgnangpmgawlvhhn
vlphdgnvlrvkghqgralgrdgmievtvtirdnqpekvtisgtavilfhaewaiel
Sequence, based on observed residues (ATOM records): (download)
>1qy9B (B:)
pqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvriry
ftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleqgt
pgfepplegetraaiinalhlteddilpglpiqvattghskvmiplkpevdidalspdln
altaiskkigcngffpfqirpgknetdgrmfspaigivedpvtgnangpmgawlvhhnvl
phdgnvlrvkghqgralgrdgmievtvtirdnqpekvtisgtavilfhaewaiel
- Chain 'C':
Sequence, based on SEQRES records: (download)
>1qy9C (C:)
mkpqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvri
ryftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleq
gtpgfepplegetraaiinalhlteddilpglpiqvattghskvmiplkpevdidalspd
lnaltaiskkigcngffpfqirpgknetdgrmfspaigivedpvtgnangpmgawlvhhn
vlphdgnvlrvkghqgralgrdgmievtvtirdnqpekvtisgtavilfhaewaiel
Sequence, based on observed residues (ATOM records): (download)
>1qy9C (C:)
kpqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvrir
yftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleqg
tpgfepplegetraaiinalhlteddilpglpiqvattghskvmiplkpevdidalspdl
naltaiskkigcngffpfqirpgknetdgrmfspaigivedpvtgnangpmgawlvhhnv
lphdgnvlrvkghqgralgrdgmievtvtirdnqpekvtisgtavilfhaewaiel
- Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)
>1qy9D (D:)
mkpqvyhvdaftsqpfrgnsagvvfpadnlseaqmqliarelghsetafllhsddsdvri
ryftptvevpicghatvaahyvrakvlglgnctiwqtslagkhrvtiekhnddyrisleq
gtpgfepplegetraaiinalhlteddilpglpiqvattghskvmiplkpevdidalspd
lnaltaiskkigcngffpfqirpgknetdgrmfspaigivedpvtgnangpmgawlvhhn
vlphdgnvlrvkghqgralgrdgmievtvtirdnqpekvtisgtavilfhaewaiel