PDB entry 1qse

View 1qse on RCSB PDB site
Description: structure of human a6-tcr bound to hla-a2 complexed with altered htlv-1 tax peptide v7r
Class: immune system
Keywords: human t cell receptor, tcr/peptide/MHC complex, hla-a2, immune system
Deposited on 1999-06-21, released 1999-12-21
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-08-25, with a file datestamp of 2009-08-21.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.243
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: PROTEIN (MHC class I HLA-A)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.06: d1qsea1, d1qsea2
  • Chain 'B':
    Compound: protein (beta-2 microglobulin)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P61769 (0-99)
      • engineered (0)
    Domains in SCOPe 2.06: d1qseb_
  • Chain 'C':
    Compound: Tax Peptide V7R
    Species: synthetic, synthetic
    Database cross-references and differences (RAF-indexed):
    • PDB 1QSE (0-8)
  • Chain 'D':
    Compound: PROTEIN (hman T-Cell receptor)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1QSE (0-199)
    Domains in SCOPe 2.06: d1qsed1, d1qsed2
  • Chain 'E':
    Compound: PROTEIN (hman T-Cell receptor)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 1QSE (0-242)
    Domains in SCOPe 2.06: d1qsee1, d1qsee2

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qseA (A:)
gshsmryfftsvsrpgrgeprfiavgyvddtqfvrfdsdaasqrmeprapwieqegpeyw
dgetrkvkahsqthrvdlgtlrgyynqseagshtvqrmygcdvgsdwrflrgyhqyaydg
kdyialkedlrswtaadmaaqttkhkweaahvaeqlraylegtcvewlrrylengketlq
rtdapkthmthhavsdheatlrcwalsfypaeitltwqrdgedqtqdtelvetrpagdgt
fqkwaavvvpsgqeqrytchvqheglpkpltlrw

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qseB (B:)
miqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskd
wsfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qseD (D:)
keveqnsgplsvpegaiaslnctysdrgsqsffwyrqysgkspelimsiysngdkedgrf
taqlnkasqyvsllirdsqpsdsatylcavttdswgklqfgagtqvvvtpdiqnpdpavy
qlrdskssdksvclftdfdsqtnvsqskdsdvyitdktvldmrsmdfksnsavawsnksd
facanafnnsiipedtffps

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qseE (E:)
gvtqtpkfqvlktgqsmtlqcaqdmnheymswyrqdpgmglrlihysvgagitdqgevpn
gynvsrsttedfplrllsaapsqtsvyfcasrpglaggrpeqyfgpgtrltvtedlknvf
ppevavfepseaeishtqkatlvclatgfypdhvelswwvngkevhsgvstdpqplkeqp
alndsryalssrlrvsatfwqnprnhfrcqvqfyglsendewtqdrakpvtqivsaeawg
rad