PDB entry 1qrk

View 1qrk on RCSB PDB site
Description: human factor xiii with strontium bound in the ion site
Class: transferase
Keywords: transglutaminase, blood coagulation, calcium, strontium, transferase
Deposited on 1999-06-14, released 1999-07-02
The last revision prior to the SCOPe 2.06 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: 0.183
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein (coagulation factor xiii)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00488
      • conflict (650)
    Domains in SCOPe 2.06: d1qrka1, d1qrka2, d1qrka3, d1qrka4
  • Chain 'B':
    Compound: protein (coagulation factor xiii)
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P00488
      • conflict (650)
    Domains in SCOPe 2.06: d1qrkb1, d1qrkb2, d1qrkb3, d1qrkb4
  • Heterogens: SR, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >1qrkA (A:)
    setsrtafggrravppnnsnaaeddlptvelqgvvprgvnlqeflnvtsvhlfkerwdtn
    kvdhhtdkyennklivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvp
    ivselqsgkwgakivmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdt
    yilfnpwceddavyldnekereeyvlndigvifygevndiktrswsygqfedgildtcly
    vmdraqmdlsgrgnpikvsrvgsamvnakddegvlvgswdniyaygvppsawtgsvdill
    eyrssenpvrygqcwvfagvfntflrclgiparivtnyfsahdndanlqmdifleedgnv
    nskltkdsvwnyhcwneawmtrpdlpvgfggwqavdstpqensdgmyrcgpasvqaikhg
    hvcfqfdapfvfaevnsdliyitakkdgthvvenvdathigklivtkqiggdgmmditdt
    ykfqegqeeerlaletalmygakkplntegvmksrsnvdmdfevenavlgkdfklsitfr
    nnshnrytitaylsanitfytgvpkaefkketfdvtleplsfkkeavliqageymgqlle
    qaslhffvtarinetrdvlakqkstvltipeiiikvrgtqvvgsdmtvtveftnplketl
    rnvwvhldgpgvtrpmkkmfreirpnstvqweevcrpwvsghrkliasmssdslrhvyge
    ldvqiqrrpsm
    

    Sequence, based on observed residues (ATOM records): (download)
    >1qrkA (A:)
    ggrravppnnsnaaeddlptvelnvtsvhlfkerwdtnkvdhhtdkyennklivrrgqsf
    yvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqsgkwgakivmredrsv
    rlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpwceddavyldnekere
    eyvlndigvifygevndiktrswsygqfedgildtclyvmdraqmdlsgrgnpikvsrvg
    samvnakddegvlvgswdniyaygvppsawtgsvdilleyrssenpvrygqcwvfagvfn
    tflrclgiparivtnyfsahdndanlqmdifleedgnvnskltkdsvwnyhcwneawmtr
    pdlpvgfggwqavdstpqensdgmyrcgpasvqaikhghvcfqfdapfvfaevnsdliyi
    takkdgthvvenvdathigklivtkqiggdgmmditdtykfqegqeeerlaletalmyga
    kkplntegvnvdmdfevenavlgkdfklsitfrnnshnrytitaylsanitfytgvpkae
    fkketfdvtleplsfkkeavliqageymgqlleqaslhffvtarinetrdvlakqkstvl
    tipeiiikvrgtqvvgsdmtvtveftnplketlrnvwvhldgpgvtrpmkkmfreirpns
    tvqweevcrpwvsghrkliasmssdslrhvygeldvqiqr
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1qrkB (B:)
    setsrtafggrravppnnsnaaeddlptvelqgvvprgvnlqeflnvtsvhlfkerwdtn
    kvdhhtdkyennklivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvp
    ivselqsgkwgakivmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdt
    yilfnpwceddavyldnekereeyvlndigvifygevndiktrswsygqfedgildtcly
    vmdraqmdlsgrgnpikvsrvgsamvnakddegvlvgswdniyaygvppsawtgsvdill
    eyrssenpvrygqcwvfagvfntflrclgiparivtnyfsahdndanlqmdifleedgnv
    nskltkdsvwnyhcwneawmtrpdlpvgfggwqavdstpqensdgmyrcgpasvqaikhg
    hvcfqfdapfvfaevnsdliyitakkdgthvvenvdathigklivtkqiggdgmmditdt
    ykfqegqeeerlaletalmygakkplntegvmksrsnvdmdfevenavlgkdfklsitfr
    nnshnrytitaylsanitfytgvpkaefkketfdvtleplsfkkeavliqageymgqlle
    qaslhffvtarinetrdvlakqkstvltipeiiikvrgtqvvgsdmtvtveftnplketl
    rnvwvhldgpgvtrpmkkmfreirpnstvqweevcrpwvsghrkliasmssdslrhvyge
    ldvqiqrrpsm
    

    Sequence, based on observed residues (ATOM records): (download)
    >1qrkB (B:)
    grravppnnsnaaeddlptvelqgvvlqeflnvtsvhlfkerwdtnkvdhhtdkyennkl
    ivrrgqsfyvqidfsrpydprrdlfrveyvigrypqenkgtyipvpivselqsgkwgaki
    vmredrsvrlsiqsspkcivgkfrmyvavwtpygvlrtsrnpetdtyilfnpwceddavy
    ldnekereeyvlndigvifygevndiktrswsygqfedgildtclyvmdraqmdlsgrgn
    pikvsrvgsamvnakddegvlvgswdniyaygvppsawtgsvdilleyrssenpvrygqc
    wvfagvfntflrclgiparivtnyfsahdndanlqmdifleedgnvnskltkdsvwnyhc
    wneawmtrpdlpvgfggwqavdstpqensdgmyrcgpasvqaikhghvcfqfdapfvfae
    vnsdliyitakkdgthvvenvdathigklivtkqiggdgmmditdtykfqegqeeerlal
    etalmygakkplnsnvdmdfevenavlgkdfklsitfrnnshnrytitaylsanitfytg
    vpkaefkketfdvtleplsfkkeavliqageymgqlleqaslhffvtarinetrdvlakq
    kstvltipeiiikvrgtqvvgsdmtvtveftnplketlrnvwvhldgpgvtrpmkkmfre
    irpnstvqweevcrpwvsghrkliasmssdslrhvygeldvqiqr