PDB entry 1qqp

View 1qqp on RCSB PDB site
Description: foot-and-mouth disease virus/ oligosaccharide receptor complex.
Class: virus
Keywords: VIRUS, HEPARAN SULPHATE, VIRUS-RECEPTOR INTERACTIONS/PROTEIN-CARBOHYDRATE INTERACTIONS, VIRUS/VIRAL PROTEIN, Icosahedral virus
Deposited on 1999-05-20, released 1999-06-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-04.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: protein (genome polyprotein)
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03305 (0-End)
      • see remark 999 (55)
    Domains in SCOPe 2.08: d1qqp1_
  • Chain '2':
    Compound: protein (genome polyprotein)
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03305 (0-217)
      • see remark 999 (129)
    Domains in SCOPe 2.08: d1qqp.1
  • Chain '3':
    Compound: protein (genome polyprotein)
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P03305 (0-219)
      • see remark 999 (84)
      • see remark 999 (167)
      • see remark 999 (172)
    Domains in SCOPe 2.08: d1qqp3_
  • Chain '4':
    Compound: protein (genome polyprotein)
    Species: Foot-and-mouth disease virus [TaxId:12110]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1qqp.1
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >1qqp1 (1:)
ttsagesadpvtttvenyggetqiqrrqhtdvsfimdrfvkvtpqnqinildlmqvpsht
lvgallrastyyfsdleiavkhegdltwvpngapekaldnttnptayhkapltrlalpyt
aphrvlatvyngecrysrnavpnlrgdlqvlaqkvartlptsfnygaikatrvtellyrm
kraetycprpllaihptearhkqkivapvkqtl

    Sequence, based on observed residues (ATOM records): (download) 
    >1qqp1 (1:)
ttsagesadpvtttvenyggetqiqrrqhtdvsfimdrfvkvtpqnqinildlmqvpsht
lvgallrastyyfsdleiavkhegdltwvpngapekaldnttnptayhkapltrlalpyt
aphrvlatvyngecrtlptsfnygaikatrvtellyrmkraetycprpllaihptearhk
qkivapvk

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >1qqp2 (2:)
dkkteettlledrilttrnghttsttqssvgvtygyataedfvsgpntsgletrvvqaer
ffkthlfdwvtsdsfgrchllelptdhkgvygsltdsyaymrngwdvevtavgnqfnggc
llvamvpelcsiqkrelyqltlfphqfinprtnmtahitvpfvgvnrydqykvhkpwtlv
vmvvapltvntegapqikvyaniaptnvhvagefpske

    Sequence, based on observed residues (ATOM records): (download) 
    >1qqp2 (2:)
dkktttlledrilttrnghttsttqssvgvtygyataedfvsgpntsgletrvvqaerff
kthlfdwvtsdsfgrchllelptdhkgvygsltdsyaymrngwdvevtavgnqfnggcll
vamvpelcsiqkrelyqltlfphqfinprtnmtahitvpfvgvnrydqykvhkpwtlvvm
vvapltvntegapqikvyaniaptnvhvagefpske

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qqp3 (3:)
gifpvacsdgygglvttdpktadpvygkvfnpprnqlpgrftnlldvaeacptflrfegg
vpyvttktdsdrvlaqfdmslaakhmsntflaglaqyytqysgtinlhfmftgptdakar
ymvayappgmeppktpeaaahcihaewdtglnskftfsipylsaadytytasdvaettnv
qgwvclfqithgkadgdalvvlasagkdfelrlpvdarae

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >1qqp4 (4:)
gagqsspatgsqnqsgntgsiinnyymqqyqnsmdtqlgndaisggsnegstdttsthtt
ntqnndwfsklassafsglfgalla

    Sequence, based on observed residues (ATOM records): (download) 
    >1qqp4 (4:)
sgntgsiinnyymqqyqnsmdtqlgndwfsklassafsglfgalla