PDB entry 1qle

View 1qle on RCSB PDB site
Description: cryo-structure of the paracoccus denitrificans four-subunit cytochrome c oxidase in the completely oxidized state complexed with an antibody fv fragment
Class: oxidoreductase/immune system
Keywords: oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport, transmembrane, cytochrome oxidase, antibody complex
Deposited on 1999-08-30, released 1999-12-02
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.235
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cytochrome c oxidase polypeptide I-beta
    Species: Paracoccus denitrificans [TaxId:266]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1qlea_
  • Chain 'B':
    Compound: cytochrome c oxidase polypeptide II
    Species: Paracoccus denitrificans [TaxId:266]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1qleb1, d1qleb2
  • Chain 'C':
    Compound: cytochrome c oxidase polypeptide III
    Species: Paracoccus denitrificans [TaxId:266]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1qlec_
  • Chain 'D':
    Compound: ccytochrome c oxidase
    Species: Paracoccus denitrificans [TaxId:266]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.03: d1qled_
  • Chain 'H':
    Compound: heavy chain antibody fv fragment
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1QLE (0-107)
    Domains in SCOPe 2.03: d1qleh_
  • Chain 'L':
    Compound: light chain antibody fv fragment
    Species: Mus musculus [TaxId:10090]
    Domains in SCOPe 2.03: d1qlel_
  • Heterogens: PC1, HEA, CUA, CU, CA, MN

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1qleA (A:)
    gfftrwfmstnhkdigilylftagivglisvcftvymrmelqhpgvqymclegarliada
    saectpnghlwnvmityhgvlmmffvvipalfggfgnyfmplhigapdmafprlnnlsyw
    myvcgvalgvasllapggndqmgsgvgwvlypplstteagysmdlaifavhvsgassilg
    ainiittflnmrapgmtlfkvplfawsvfitawlillslpvlagaitmllmdrnfgtqff
    dpagggdpvlyqhilwffghpevyiiilpgfgiishvistfakkpifgylpmvlamaaig
    ilgfvvwahhmytagmsltqqayfmlatmtiavptgikvfswiatmwggsiefktpmlwa
    fgflflftvggvtgvvlsqapldrvyhdtyyvvahfhyvmslgavfgifagvyywigkms
    grqypewagqlhfwmmfigsnliffpqhflgrqgmprryidypvefaywnnissigayis
    fasflffigivfytlfagkrvnvpnywnehadtlewtlpspppehtfetlpkredwdr
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1qleB (B:)
    qdvlgdlpvigkpvnggmnfqpassplahdqqwldhfvlyiitavtifvcllllicivrf
    nrranpvparfthntpieviwtlvpvlilvaigafslpilfrsqempndpdlvikaighq
    wywsyeypndgvafdalmlekealadagysedeyllatdnpvvvpvgkkvlvqvtatdvi
    hawtipafavkqdavpgriaqlwfsvdqegvyfgqcselcginhaympivvkavsqekye
    awlagakeefaa
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1qleC (C:)
    ahvknhdyqilppsiwpffgaigafvmltgavawmkgitffglpvegpwmfliglvgvly
    vmfgwwadvvnegetgehtpvvriglqygfilfimsevmffvawfwafiknalypmgpds
    pikdgvwppegivtfdpwhlplintlilllsgvavtwahhafvlegdrkttinglivavi
    lgvcftglqayeyshaafgladtvyagafymatgfhgahviigtiflfvclirllkgqmt
    qkqhvgfeaaawywhfvdvvwlflfvviyiwgr
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1qleD (D:)
    tdhkhgemdirhqqatfagfikgatwvsilsiavlvflalans
    

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1qleH (H:)
    evklqesggdlvqpggslklscaasgftfssytmswvrqtpekrlewvasinngggrtyy
    pdtvkgrftisrdnakntlylqmsslksedtamyycvrheyyyamdywgqgttvtvssa
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1qleL (L:)
    dieltqtpvslsasvgetvtitcraseniysylawyqqkqgkspqflvynaktlgegvps
    rfsgsgsgtqfslkinsllpedfgsyycqhhygtppltfgggtkleik