PDB entry 1qle

View 1qle on RCSB PDB site
Description: cryo-structure of the paracoccus denitrificans four-subunit cytochrome c oxidase in the completely oxidized state complexed with an antibody fv fragment
Class: complex (oxidoreductase/antibody)
Keywords: complex (oxidoreductase/antibody), electron transport, transmembrane, cytochrome oxidase, antibody complex
Deposited on 1999-08-30, released 1999-12-02
The last revision prior to the SCOP 1.73 freeze date was dated 2003-08-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.235
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: cytochrome c oxidase polypeptide I-beta
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1qlea_
  • Chain 'B':
    Compound: cytochrome c oxidase polypeptide II
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1qleb1, d1qleb2
  • Chain 'C':
    Compound: cytochrome c oxidase polypeptide III
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1qlec_
  • Chain 'D':
    Compound: ccytochrome c oxidase
    Species: Paracoccus denitrificans
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.73: d1qled_
  • Chain 'H':
    Compound: heavy chain antibody fv fragment
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • EMBL CAC08454 (0-117)
      • conflict (12)
      • conflict (32)
      • conflict (41)
      • conflict (49)
      • conflict (51-52)
      • conflict (55-56)
      • conflict (62)
      • conflict (96)
      • conflict (98-100)
      • insertion (103)
      • conflict (104)
    Domains in SCOP 1.73: d1qleh_
  • Chain 'L':
    Compound: light chain antibody fv fragment
    Species: MUS MUSCULUS
    Database cross-references and differences (RAF-indexed):
    • Uniprot P01636 (0-107)
      • conflict (2-3)
      • conflict (6)
      • conflict (8-9)
      • conflict (45)
      • conflict (49)
      • conflict (54)
      • conflict (78)
      • insertion (93)
      • conflict (94)
      • conflict (96)
      • conflict (100)
    Domains in SCOP 1.73: d1qlel_
  • Heterogens: CU, CA, MN, HEA, CUA, PC1

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qleA (A:)
gfftrwfmstnhkdigilylftagivglisvcftvymrmelqhpgvqymclegarliada
saectpnghlwnvmityhgvlmmffvvipalfggfgnyfmplhigapdmafprlnnlsyw
myvcgvalgvasllapggndqmgsgvgwvlypplstteagysmdlaifavhvsgassilg
ainiittflnmrapgmtlfkvplfawsvfitawlillslpvlagaitmllmdrnfgtqff
dpagggdpvlyqhilwffghpevyiiilpgfgiishvistfakkpifgylpmvlamaaig
ilgfvvwahhmytagmsltqqayfmlatmtiavptgikvfswiatmwggsiefktpmlwa
fgflflftvggvtgvvlsqapldrvyhdtyyvvahfhyvmslgavfgifagvyywigkms
grqypewagqlhfwmmfigsnliffpqhflgrqgmprryidypvefaywnnissigayis
fasflffigivfytlfagkrvnvpnywnehadtlewtlpspppehtfetlpkredwdr

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qleB (B:)
qdvlgdlpvigkpvnggmnfqpassplahdqqwldhfvlyiitavtifvcllllicivrf
nrranpvparfthntpieviwtlvpvlilvaigafslpilfrsqempndpdlvikaighq
wywsyeypndgvafdalmlekealadagysedeyllatdnpvvvpvgkkvlvqvtatdvi
hawtipafavkqdavpgriaqlwfsvdqegvyfgqcselcginhaympivvkavsqekye
awlagakeefaa

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qleC (C:)
ahvknhdyqilppsiwpffgaigafvmltgavawmkgitffglpvegpwmfliglvgvly
vmfgwwadvvnegetgehtpvvriglqygfilfimsevmffvawfwafiknalypmgpds
pikdgvwppegivtfdpwhlplintlilllsgvavtwahhafvlegdrkttinglivavi
lgvcftglqayeyshaafgladtvyagafymatgfhgahviigtiflfvclirllkgqmt
qkqhvgfeaaawywhfvdvvwlflfvviyiwgr

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qleD (D:)
tdhkhgemdirhqqatfagfikgatwvsilsiavlvflalans

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qleH (H:)
evklqesggdlvqpggslklscaasgftfssytmswvrqtpekrlewvasinngggrtyy
pdtvkgrftisrdnakntlylqmsslksedtamyycvrheyyyamdywgqgttvtvssa

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qleL (L:)
dieltqtpvslsasvgetvtitcraseniysylawyqqkqgkspqflvynaktlgegvps
rfsgsgsgtqfslkinsllpedfgsyycqhhygtppltfgggtkleik