PDB entry 1qkz
View 1qkz on RCSB PDB site
Description: fab fragment (mn14c11.6) in complex with a peptide antigen derived from neisseria meningitidis p1.7 serosubtype antigen and domain II from streptococcal protein g
Class: immune system
Keywords: immune system, fab, pora, neisseria meningitidis, porin
Deposited on
1999-08-17, released
2000-02-06
The last revision prior to the SCOPe 2.04 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-03.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.209
AEROSPACI score: 0.43
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: protein g-prime
Species: STREPTOCOCCUS SP. [TaxId:1320]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1qkza_ - Chain 'H':
Compound: antibody
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.04: d1qkzh1, d1qkzh2 - Chain 'L':
Compound: antibody
Species: Mus musculus [TaxId:10090]
Database cross-references and differences (RAF-indexed):
- EMBL MMU245476 (0-115)
- PDB 1QKZ (123-216)
Domains in SCOPe 2.04: d1qkzl1, d1qkzl2 - Chain 'P':
Compound: major outer membrane protein p1.16
Species: NEISSERIA MENINGITIDIS, synthetic [TaxId:487]
Database cross-references and differences (RAF-indexed):
- Heterogens: HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>1qkzA (A:)
mtpavttyklvingktlkgetttkavdaataekvfkqyandngvdgewtyddatktftvt
ekpe
Sequence, based on observed residues (ATOM records): (download)
>1qkzA (A:)
vttyklvingktlkgetttkavdaataekvfkqyandngvdgewtyddatktftvtek
- Chain 'H':
Sequence; same for both SEQRES and ATOM records: (download)
>1qkzH (H:)
dvklvesggglvkpgrslklscaasgftfsdyymfwvrqtpeqrlewvatisdggaytyy
pdsvkgrftisrdnaknnlylqmnslksedtgmyycardpleyygmdywgqgtsvavssa
kttapsvyplapvcgdttgssvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlqsdl
ytlsssvnvtsstwpsqsitcnvahpasstkvdkkivpr
- Chain 'L':
Sequence, based on SEQRES records: (download)
>1qkzL (L:)
nivmtqtplslpvslgdqasiscrssqslvhsngntylhwylqkpgqspklliytvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyfcsqsthfptfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgkerqngvlnswtdqdskdstysms
stltltkdeyerhnsytceathktstspivksfnrne
Sequence, based on observed residues (ATOM records): (download)
>1qkzL (L:)
nivmtqtplslpvslgdqasiscrssqslvhsngntylhwylqkpgqspklliytvsnrf
sgvpdrfsgsgsgtdftlkisrveaedlgvyfcsqsthfptfgggtkleikradaaptvs
ifppsseqltsggasvvcflnnfypkdinvkwkidgkerqngvlnswtdqdstysmsstl
tltkdeyerhnsytceathktstspivksfnrne
- Chain 'P':
No sequence available.