PDB entry 1qkr

View 1qkr on RCSB PDB site
Description: crystal structure of the vinculin tail and a pathway for activation
Class: actin cytoskeleton
Keywords: actin cytoskeleton, cell adhesion, helical bundle, lipid binding
Deposited on 1999-08-04, released 2000-08-04
The last revision prior to the SCOPe 2.07 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: 0.2
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vinculin
    Species: Gallus gallus [TaxId:9031]
    Gene: VCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12003
      • modified residue (19-21)
      • modified residue (47)
      • modified residue (51)
      • modified residue (54)
      • modified residue (126)
      • modified residue (143)
      • modified residue (152)
    Domains in SCOPe 2.07: d1qkra_
  • Chain 'B':
    Compound: vinculin
    Species: Gallus gallus [TaxId:9031]
    Gene: VCL
    Database cross-references and differences (RAF-indexed):
    • Uniprot P12003
      • modified residue (19-21)
      • modified residue (47)
      • modified residue (51)
      • modified residue (54)
      • modified residue (126)
      • modified residue (143)
      • modified residue (152)
    Domains in SCOPe 2.07: d1qkrb_
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1qkrA (A:)
eekdeefpeqkageainqpmmmaarqlhdearkwsskgndiiaaakrmallmaemsrlvr
ggsgnkraliqcakdiakasdevtrlakevakqctdkrirtnllqvceriptistqlkil
stvkatmlgrtnisdeeseqatemlvhnaqnlmqsvketvreaeaasikirtdagftlrw
vrktpwyq

    Sequence, based on observed residues (ATOM records): (download) 
    >1qkrA (A:)
kdeefpeqkageainqpmmmaarqlhdearkwsskgndiiaaakrmallmaemsrlvrgg
sgnkraliqcakdiakasdevtrlakevakqctdkrirtnllqvceriptistqlkilst
vkatmlgrtnisdeeseqatemlvhnaqnlmqsvketvreaeaasikirtdagftlrwvr
k

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1qkrB (B:)
eekdeefpeqkageainqpmmmaarqlhdearkwsskgndiiaaakrmallmaemsrlvr
ggsgnkraliqcakdiakasdevtrlakevakqctdkrirtnllqvceriptistqlkil
stvkatmlgrtnisdeeseqatemlvhnaqnlmqsvketvreaeaasikirtdagftlrw
vrktpwyq

    Sequence, based on observed residues (ATOM records): (download) 
    >1qkrB (B:)
ekdeefpeqkageainqpmmmaarqlhdearkwsskgndiiaaakrmallmaemsrlvrg
gsgnkraliqcakdiakasdevtrlakevakqctdkrirtnllqvceriptistqlkils
tvkatmlgrtnisdeeseqatemlvhnaqnlmqsvketvreaeaasiagftlrwvrktpw