PDB entry 1qd7

View 1qd7 on RCSB PDB site
Description: partial model for 30s ribosomal subunit
Class: ribosome
Keywords: 30s ribosomal subunit, low resolution model
Deposited on 1999-07-09, released 1999-08-31
The last revision prior to the SCOP 1.75 freeze date was dated 2003-04-01, with a file datestamp of 2007-06-04.
Experiment type: XRAY
Resolution: 5.5 Å
R-factor: N/A
AEROSPACI score: -0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: central fragment of 16 s RNA
    Species: Thermus thermophilus
  • Chain 'B':
    Compound: end fragment of 16 s RNA
    Species: Thermus thermophilus
  • Chain 'C':
    Compound: s4 ribosomal protein
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed):
    • Uniprot P81288 (1-158)
      • conflict (78)
    Domains in SCOP 1.75: d1qd7c_
  • Chain 'D':
    Compound: s5 ribosomal protein
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1qd7d_
  • Chain 'E':
    Compound: s6 ribosomal protein
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1qd7e_
  • Chain 'F':
    Compound: s7 ribosomal protein
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1qd7f_
  • Chain 'G':
    Compound: s8 ribosomal protein
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed):
    • Uniprot P24319 (1-135)
      • conflict (22)
      • conflict (34)
      • conflict (49)
      • conflict (58-59)
      • conflict (78)
      • conflict (85)
      • conflict (112)
    Domains in SCOP 1.75: d1qd7g_
  • Chain 'H':
    Compound: s15 ribosomal protein
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed): Domains in SCOP 1.75: d1qd7h_
  • Chain 'I':
    Compound: s17 ribosomal protein
    Species: Thermus thermophilus
    Database cross-references and differences (RAF-indexed):
    • Uniprot P23828 (0-81)
      • conflict (80-81)
    Domains in SCOP 1.75: d1qd7i_
  • Chain 'J':
    Compound: s20 ribosomal protein
    Species: Thermus thermophilus
    Domains in SCOP 1.75: d1qd7j_

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qd7C (C:)
mklseyglqlqekqklrhmygvnerqfrktfeeagkmpgkhgenfmillesrldnlvyrl
glartrrqarqlvthghilvdgsrvnipsyrvkpgqtiavreksrnlqvikealeannyi
pdylsfdpekmegtytrlperselpaeinealivefysr

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qd7D (D:)
inpnkleleervvavnrvakvvkggrrlrfsalvvvgdknghvgfgtgkaqevpeairka
iedakknlievpivgttiphevighfgageiilkpasegtgviaggparavlelagisdi
lsksigsntpinmvratfdglkqlk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qd7E (E:)
mrryevnivlnpnldqsqlalekeiiqralenygarvekveelglrrlaypiakdpqgyf
lwyqvempedrvndlarelrirdnvrrvmvvksqepf

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qd7F (F:)
lqpdlvygdvlvtafinkimrdgkknlaarifydackiiqektgqeplkvfkqavenvkp
rmevrsrrvgganyqvpmevsprrqqslalrwlvqaanqrperraavriahelmdaaegk
ggavkkkedvermae

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qd7G (G:)
tdpiadmltrirnatrvykestdvpasrfkeeilrilaregfikgyervdvdgkpylrvy
lkygprrqgpdprpeqvihhirriskpgrrvyvgvkeiprvrrglgiailstskgvltdr
earklgvggelicevw

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qd7H (H:)
ltqerkreiieqfkvhendtgspevqiailteqinnlnehlrvhkkdhhsrrgllkmvgk
rrrllaylrnkdvaryreiveklgl

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qd7I (I:)
qrkvyvgrvvsdkmdktitvlvetykkhplygkrvkyskkykahdehneakvgdivkime
trplsatkrfrlveivekavragagagaa

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1qd7J (J:)
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