PDB entry 1qbk

View 1qbk on RCSB PDB site
Description: structure of the karyopherin beta2-ran gppnhp nuclear transport complex
Class: nuclear transport protein complex
Keywords: heat repeats, nuclear transport protein complex
Deposited on 1999-04-23, released 1999-06-01
The last revision prior to the SCOPe 2.03 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 3 Å
R-factor: 0.267
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: karyopherin beta2
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q92973 (Start-889)
      • conflict (216)
      • modified residue (174)
      • modified residue (209)
      • modified residue (236)
      • modified residue (246)
      • modified residue (253)
      • modified residue (260)
      • modified residue (307)
      • modified residue (428)
      • modified residue (431)
      • modified residue (481)
      • modified residue (563)
      • modified residue (565)
      • modified residue (574)
      • modified residue (623)
      • modified residue (640)
      • modified residue (671)
      • modified residue (679)
      • modified residue (709)
      • modified residue (738)
      • modified residue (742)
      • modified residue (748)
      • modified residue (788)
      • modified residue (819)
      • modified residue (851)
    Domains in SCOPe 2.03: d1qbkb_
  • Chain 'C':
    Compound: ran
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P62826
      • conflict (128)
      • modified residue (88)
      • modified residue (178)
      • modified residue (188)
    Domains in SCOPe 2.03: d1qbkc_
  • Heterogens: MG, GNP

PDB Chain Sequences:

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1qbkB (B:)
    meyewkpdeqglqqilqllkesqspdttiqrtvqqkleqlnqypdfnnylifvltklkse
    deptrslsglilknnvkahfqnfpngvtdfikseclnnigdsspliratvgilittiask
    gelqnwpdllpklcslldsedyntcegafgalqkicedsaeildsdvldrplnimipkfl
    qffkhsspkirshavacvnqfiisrtqalmlhidsftenlfalagdeepevrknvcralv
    mllevrmdrllphmhniveymlqrtqdqdenvaleacefwltlaeqpickdvlvrhlpkl
    ipvlvngmkysdidiillkgdveedetipdseqdirprfhrsrtvaqqhdedgieeeddd
    ddeiddddtisdwnlrkcsaaaldvlanvyrdellphilpllkellfhhewvvkesgilv
    lgaiaegcmqgmipylpeliphliqclsdkkalvrsitcwtlsryahwvvsqppdtylkp
    lmtellkrildsnkrvqeaacsafatleeeactelvpylayildtlvfafskyqhknlli
    lydaigtladsvghhlnkpeyiqmlmppliqkwnmlkdedkdlfplleclssvatalqsg
    flpycepvyqrcvnlvqktlaqamlnnaqpdqyeapdkdfmivaldllsglaeglggnie
    qlvarsniltlmyqcmqdkmpevrqssfallgdltkacfqhvkpciadfmpilgtnlnpe
    fisvcnnatwaigeisiqmgiemqpyipmvlhqlveiinrpntpktllentaitigrlgy
    vcpqevapmlqqfirpwctslrnirdneekdsafrgictmisvnpsgviqdfiffcdava
    swinpkddlrdmfckilhgfknqvgdenwrrfsdqfplplkerlaafygv
    

    Sequence, based on observed residues (ATOM records): (download)
    >1qbkB (B:)
    yewkpdeqglqqilqllkesqspdttiqrtvqqkleqlnqypdfnnylifvltklksede
    ptrslsglilknnvkahfqnfpngvtdfikseclnnigdsspliratvgilittiaskge
    lqnwpdllpklcslldsedyntcegafgalqkicedsaeildsdrplnimipkflqffkh
    sspkirshavacvnqfiisrtqalmlhidsftenlfalagdeepevrknvcralvmllev
    rmdrllphmhniveymlqrtqdqdenvaleacefwltlaeqpickdvlvrhlpklipvlv
    ngmkysdidiillkgdveedetipdseqdirprfhrsrtvaqqhdeddddddeiddddti
    sdwnlrkcsaaaldvlanvyrdellphilpllkellfhhewvvkesgilvlgaiaegcmq
    gmipylpeliphliqclsdkkalvrsitcwtlsryahwvvsqppdtylkplmtellkril
    dsnkrvqeaacsafatleeeactelvpylayildtlvfafskyqhknllilydaigtlad
    svghhlnkpeyiqmlmppliqkwnmlkdedkdlfplleclssvatalqsgflpycepvyq
    rcvnlvqktlaqamlnnaqpdqyeapdkdfmivaldllsglaeglggnieqlvarsnilt
    lmyqcmqdkmpevrqssfallgdltkacfqhvkpciadfmpilgtnlnpefisvcnnatw
    aigeisiqmgiemqpyipmvlhqlveiinrpntpktllentaitigrlgyvcpqevapml
    qqfirpwctslrnirdneekdsafrgictmisvnpsgviqdfiffcdavaswinpkddlr
    dmfckilhgfknqvgdenwrrfsdqfplplkerlaafygv
    

  • Chain 'C':
    Sequence, based on SEQRES records: (download)
    >1qbkC (C:)
    maaqgepqvqfklvlvgdggtgkttfvkrhltgefekkyvatlgvevhplvfhtnrgpik
    fnvwdtagqekfgglrdgyyiqaqcaiimfdvtsrvtyknvpnwhrdlvrvcenipivlc
    gnkvdikdrkvkaksivfhrkknlqyydisaksnynfekpflwlarkligdpnlefvamp
    alappevvmdpalaaqyehdlevaqttalpdedddl
    

    Sequence, based on observed residues (ATOM records): (download)
    >1qbkC (C:)
    qvqfklvlvgdggtgkttfvkrhltgefekkyvatlgvevhplvfhtnrgpikfnvwdta
    gqekfgglrdgyyiqaqcaiimfdvtsrvtyknvpnwhrdlvrvcenipivlcgnkvdik
    drkvkaksivfhrkknlqyydisaksnynfekpflwlarkligdpnlefvampalappev
    vmdpalaaqy