PDB entry 1q9w

View 1q9w on RCSB PDB site
Description: S45-18 Fab pentasaccharide bisphosphate complex
Class: immune system
Keywords: antigen-binding fragment, Fab, anti-cabohydrate, anti-LPS, antibody, immunoglobulin, Kdo, protein-carbohydrate complex, IMMUNE SYSTEM
Deposited on 2003-08-26, released 2004-01-27
The last revision prior to the SCOPe 2.04 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: 0.212
AEROSPACI score: 0.5 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: S45-18 Fab (IgG1k) light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1Q9W (0-218)
    Domains in SCOPe 2.04: d1q9wa1, d1q9wa2
  • Chain 'B':
    Compound: S45-18 Fab (IgG1k) heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1Q9W (0-225)
    Domains in SCOPe 2.04: d1q9wb1, d1q9wb2
  • Chain 'C':
    Compound: S45-18 Fab (IgG1k) light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1Q9W (0-218)
    Domains in SCOPe 2.04: d1q9wc1, d1q9wc2
  • Chain 'D':
    Compound: S45-18 Fab (IgG1k) heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 1Q9W (0-225)
    Domains in SCOPe 2.04: d1q9wd1, d1q9wd2
  • Heterogens: MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q9wA (A:)
divmsqfpsslavsagekvtmsckssqsllnsrtrksylawyqqkpgqfpklliywaatr
esgvpdrftgsgsgtdftltissvqaedlavyyckqsynlrtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q9wB (B:)
evilvesggglvqpggslrlscstsgftftdyymswvrqppgkalewlgfirnkpkgytt
eysasvkgrftisrdnsqsilylqmntlraedsatyycvrdiysfgsrdgmdywgqgtsv
tvssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpav
lqsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdc

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q9wC (C:)
divmsqfpsslavsagekvtmsckssqsllnsrtrksylawyqqkpgqfpklliywaatr
esgvpdrftgsgsgtdftltissvqaedlavyyckqsynlrtfgggtkleikradaaptv
sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
sstltltkdeyerhnsytceathktstspivksfnrnec

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >1q9wD (D:)
evilvesggglvqpggslrlscstsgftftdyymswvrqppgkalewlgfirnkpkgytt
eysasvkgrftisrdnsqsilylqmntlraedsatyycvrdiysfgsrdgmdywgqgtsv
tvssakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpav
lqsdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivprdc