PDB entry 1q9v

View 1q9v on RCSB PDB site
Description: S25-2- Kdo monosaccharide complex
Class: immune system
Keywords: antigen-binding fragment, Fab, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, Kdo, protein-carbohydrate complex
Deposited on 2003-08-25, released 2004-01-27
The last revision prior to the SCOP 1.75 freeze date was dated 2004-01-27, with a file datestamp of 2007-06-28.
Experiment type: XRAY
Resolution: 1.73 Å
R-factor: 0.202
AEROSPACI score: 0.61 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: S25-2 Fab (IgG1k) light chain
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d1q9va1, d1q9va2
  • Chain 'B':
    Compound: S25-2 Fab (IgG1k) heavy chain
    Species: MUS MUSCULUS
    Domains in SCOP 1.75: d1q9vb1, d1q9vb2
  • Heterogens: KDO, MG, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1q9vA (A:)
    divmsqspsslavsagekvtmsckssqsllnsrtrknylawyqqkpgqspklliywastr
    esgvpdrftgsgsgtdftltitsvqaedlavyyckqsynlrtfgggtkleikradaaptv
    sifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqdskdstysm
    sstltltkdeyerhnsytceathktstspivksfnrnec
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1q9vB (B:)
    evklvesggglvqsggslrlscatsgftftdyymswvrqppgkalewlgfirnkangytt
    eyspsvkgrftisrdnsqsilylqmntlraedsatyycardhdgyyerfsywgqgtlvtv
    saakttppsvyplapgsaaqtnsmvtlgclvkgyfpepvtvtwnsgslssgvhtfpavlq
    sdlytlsssvtvpsstwpsetvtcnvahpasstkvdkkivpr